BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SHEAM (Tryptophan synthase alpha chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP-EEGLKELEKFAKSLKSA 403
            +    P    D ++ +    EG+ YL+S  GVTGA       + ++L  +KE +  P  +GFGI++P  VQ+    GA G I GSA+VK +   +    + L EL+ FA ++K+A
Sbjct:  151 IFIAPPNASADTLRLVASLGEGYTYLLSRAGVTGADNKAGMPLDSVLSALKEFNAPPPLLGFGIAEPSQVQEAIAAGAAGAISGSAVVKRIEALKDDMPKLLTELKSFASAMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SALSV (Tryptophan synthase alpha chain OS=Salmonella schwarzengrund (strain CVM19633) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 41/127 (32.28%), Postives = 65/127 (51.18%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ +     G+ YL+S  GVTGA    +  +  L+ ++KE    P   GFGIS PE V      GA G I GSA+V ++ +   SPE+ L EL  F  ++K+A
Sbjct:  139 FRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVNIIEKNHASPEQMLAELRSFVSAMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPS (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334
            K  L+ +   TPTT   R+ A++  + GFVY VS  G+TG+ ++ S  V   +  IK  +  PV VGFGI  PE  + +A   ADG +VGSA++  L
Sbjct:  146 KAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADSAAVGDAVARIKRHTDLPVCVGFGIRTPEAARAIAA-EADGAVVGSALIDAL 241          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HELP2 (Tryptophan synthase alpha chain OS=Helicobacter pylori (strain P12) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 34/109 (31.19%), Postives = 59/109 (54.13%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE 370
            K ++  +   +P      ++     S+G++Y ++  GVTGA   +      +++ +K  S  P  +GFGIS+ EH++     GADGVI GSA+VK++ E  + E  + E
Sbjct:  143 KHQIKQIFIASPNASVKDLEQAAMHSQGYIYTLARSGVTGASRILENDASAIIKTLKAFSPTPALLGFGISQKEHIKNAKEMGADGVICGSALVKIIEENLNNENAMLE 251          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CLOB8 (Tryptophan synthase alpha chain OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 2
Query:   83 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            T  DR+ AI + ++GFVY VS+ G TG R ++       L E++++   P+ +GFGIS  E V++V  +  DGVIVGSA+VK +       EG + +  F K L   L
Sbjct:  157 TSKDRIAAITKGAKGFVYCVSTNGTTGERKTLDSGTHEYLEEVRKNVDIPMCIGFGISSKEVVKEVKDY-CDGVIVGSAIVKRMA------EGKEAVIDFVKDLSDGL 257          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CAUCR (Tryptophan synthase alpha chain OS=Caulobacter crescentus GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE-----LEKFAKSLKSA 403
            ++L+    PTT   R+  +V  + GFVY VS  GVTG +++ +  V   +  ++++S  PVAVGFGI  P+    VA   AD  +VGSA+V  +  A    E + E       + AK+++SA
Sbjct:  150 IALIRLAAPTTDDARLPMVVRRTSGFVYYVSVAGVTGVKSADAADVAPAVERLRKASGLPVAVGFGIRTPDQAAAVAK-VADAAVVGSALVDEIESAAQLNENVTEKVLLKASELAKAVRSA 270          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CAUCN (Tryptophan synthase alpha chain OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE-----LEKFAKSLKSA 403
            ++L+    PTT   R+  +V  + GFVY VS  GVTG +++ +  V   +  ++++S  PVAVGFGI  P+    VA   AD  +VGSA+V  +  A    E + E       + AK+++SA
Sbjct:  150 IALIRLAAPTTDDARLPMVVRRTSGFVYYVSVAGVTGVKSADAADVAPAVERLRKASGLPVAVGFGIRTPDQAAAVAK-VADAAVVGSALVDEIESAAQLNENVTEKVLLKASELAKAVRSA 270          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRP_COPC7 (Tryptophan synthase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TRP-1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/115 (33.91%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ--TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV---KLLGEAQSPE 355
            +R+K     LS V    P+T   R++ +   ++ F+Y+VS +G TG+ A+++ + +  T+L  I+E +  P+AVGFG++  +    VA  GADGV++GS +V   K  G+ + P+
Sbjct:  139 FRQKCAASNLSYVPLIAPSTTLKRIQFLASIADSFIYVVSKMGTTGSSANVAVNEELPTILSRIREYTHVPLAVGFGVATRDQFNYVADAGADGVVIGSRIVNAIKAAGDGEVPQ 253          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PHOLL (Tryptophan synthase alpha chain OS=Photorhabdus luminescens subsp. laumondii GN=trpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS-PEEGLKELEKFAKSLKSA 403
            +R    K  ++ +    P    + ++ I     G+ YL+S  GVTG        +  L+ +++E    P   GFGIS+P+ V++    GA G I GSA+VK++ E  S PE  LKEL +F   +KSA
Sbjct:  139 FRTAAMKHGIAPIFICPPDAEDELLREIASYGRGYTYLLSRAGVTGIERRGEKPLNHLVNKLREYHAAPPLQGFGISEPKQVKETLASGAAGAISGSAIVKIIEENLSQPEIMLKELTEFVSKMKSA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HAES2 (Tryptophan synthase alpha chain OS=Haemophilus somnus (strain 2336) GN=trpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG-HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            K  +  V    P      +KA+ E S+G++YLVS  GVT A    S  ++  L++ +K+  + P+  GFGI++P+ V+ V   G  G I GSA+V+++ +     E+ L EL +F + +K A
Sbjct:  145 KYDIQPVFICPPNADETTLKAVAEKSKGYIYLVSRAGVTSAENQQSAKNLANLIKGLKKYGSAPILQGFGIAQPQQVKDVLKSGVAGAISGSAIVQIIEQNLTDREKCLSELAEFVQKMKQA 266          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_SHEAM2.305e-1233.91Tryptophan synthase alpha chain OS=Shewanella amaz... [more]
TRPA_SALSV2.305e-1232.28Tryptophan synthase alpha chain OS=Salmonella schw... [more]
TRPA_RHOPS2.305e-1240.21Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_HELP22.305e-1231.19Tryptophan synthase alpha chain OS=Helicobacter py... [more]
TRPA_CLOB82.305e-1238.89Tryptophan synthase alpha chain OS=Clostridium bei... [more]
TRPA_CAUCR2.305e-1235.25Tryptophan synthase alpha chain OS=Caulobacter cre... [more]
TRPA_CAUCN2.305e-1235.25Tryptophan synthase alpha chain OS=Caulobacter cre... [more]
TRP_COPC73.011e-1233.91Tryptophan synthase OS=Coprinopsis cinerea (strain... [more]
TRPA_PHOLL3.011e-1233.86Tryptophan synthase alpha chain OS=Photorhabdus lu... [more]
TRPA_HAES23.011e-1233.61Tryptophan synthase alpha chain OS=Haemophilus som... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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