BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AZOBR (Tryptophan synthase alpha chain OS=Azospirillum brasilense GN=trpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334
            K  ++ +   TPTT   R+ A+++ + GFVY VS  G+TGA ++ +  V   +  +K  +  PVAVGFGI  PE   +VA   AD  +VGSA+V  L
Sbjct:  155 KAGVNFIRLATPTTDDKRLPAVLQNTSGFVYYVSIAGITGAASADNAAVGAAVERLKRHTDLPVAVGFGIKTPEQAAEVAR-VADAAVVGSAIVTRL 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XANC5 (Tryptophan synthase alpha chain OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT-LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            ++ L+L+   +PTT   R+  +   ++G++Y VS  GVTGA   +  H  +  LR++++ +  PV  GFGI        +A   ADGV+VGSA+V  L +A       +  E F   L+ AL
Sbjct:  145 EVGLALIALASPTTSEQRLDMLCSTAQGYLYYVSFAGVTGASNLLDTHAASDRLRQLRQRAGAPVVAGFGIKDAASAAAMA-VDADGVVVGSALVAALADAGEVRSARERAEAFLAPLRQAL 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPA (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            K  L+ +   TPTT   R+ A++  + GFVY VS  G+TG+ ++ +  V   ++ IK  +  PV VGFGI  P+  Q +A   A+G +VGSA++  L  + + E
Sbjct:  146 KAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADASAVGAAVQRIKRHTNLPVCVGFGIRTPDAAQAIAA-QANGAVVGSALIDALKASLNAE 248          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_POLSQ (Tryptophan synthase alpha chain OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 38/115 (33.04%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +    PT+  +R+K   + + G++Y VS  GVTGA    +  V +++ +I+E +  P+AVGFGI+     + V+   AD V++GS +++LL +A  P + ++ LE F + ++ AL
Sbjct:  151 IFLLAPTSSHERIKEAAKIASGYIYYVSMRGVTGASHLNTQDVASIIPKIREETDIPIAVGFGINDAASAKAVS-VSADAVVIGSRIIRLLEDA-PPGQAVQSLETFIREIRDAL 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GLUOX (Tryptophan synthase alpha chain OS=Gluconobacter oxydans GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG----------LKELEKFAKSLKS 400
            L ++    PTT   R+  ++  + GFVY VS  G+TG  ++ +  ++  L  I+E+++ PVA+GFGIS PE  +  +  G D  +V SA++K +  A + E G          LK+LE  A ++++
Sbjct:  148 LDIISLVAPTTSNSRLFHVLREASGFVYYVSITGITGTNSASAADLEKALPRIREATSLPVAIGFGISTPEQARTASRIG-DAAVVASALIKTM--ASTLENGQATERTVPAVLKQLEGLAAAVRA 270          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CALS8 (Tryptophan synthase alpha chain OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 39/105 (37.14%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   92 DRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +R K I + S+GFVY V+  GVTG +  I   +  LL E+K+ ++ P+AVGFGI   E V ++    ADG+++GSA++  +      +EG ++L  F ++++S L
Sbjct:  156 ERAKMIAKTSKGFVYCVTRKGVTGFKGEIDKSIYELLSELKKVTSTPLAVGFGIKSKEDVLKLKE-VADGIVIGSAIINKI------DEGKEDLVSFLETIRSVL 253          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XANOP (Tryptophan synthase alpha chain OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT-LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            ++ L+L+   +PTT   R+  +   ++G++Y VS  GVTGA   +  +  +  LR++++ +  PV  GFGI        +A   ADGV+VGSA+V  L EA       +  E F   L+ AL
Sbjct:  145 EVGLALIALASPTTSEQRLDMLCSTAQGYLYYVSFAGVTGASNLLDTYAASDRLRQLRQRAGAPVVAGFGIKDAASAAAMA-VDADGVVVGSALVAALAEADDVRSARERAEAFLAPLRQAL 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XANAC (Tryptophan synthase alpha chain OS=Xanthomonas axonopodis pv. citri GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT-LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            ++ L+L+   +PTT   R+  +   ++G++Y VS  GVTGA   +  H  +  LR+++  +  PV  GFGI        +A   ADGV+VGSA+V  L E        +  E F   L+ AL
Sbjct:  145 EVGLALIALASPTTSEQRLDMLCSTAQGYLYYVSFAGVTGASNLLDTHAASDRLRQLRRRAGAPVVAGFGIKDAASAAAMA-VDADGVVVGSALVAALAEVNDVRSARERAEAFLAPLRQAL 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SHEON (Tryptophan synthase alpha chain OS=Shewanella oneidensis GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE-EGLKELEKFAKSLKSA 403
            +    P   +D +  + ++ EG+ YL+S  GVTGA       V+ +L +++E +  P  +GFGI++P  V      GA G I GSA+VK++   Q  E + L  L +F +++K+A
Sbjct:  163 IFIAPPNADSDTLAKVSQSGEGYTYLLSRAGVTGADTKAGTPVEEILAKLQEFNAPPPLLGFGIAEPAQVSAAIKAGAAGAISGSAVVKIIETHQQDEVKLLAALGEFTRTMKAA 277          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPT (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334
            K  L+ +   TPTT   R+ A++  + GFVY VS  G+TG+ ++ +  V   ++ IK  +  PV VGFGI  P+  Q +A   A+G +VGSA++  L
Sbjct:  146 KAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADASAVGAAVQRIKRHTNLPVCVGFGIRTPDAAQAIAA-QANGAVVGSALIDAL 241          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_AZOBR3.011e-1240.21Tryptophan synthase alpha chain OS=Azospirillum br... [more]
TRPA_XANC53.932e-1233.61Tryptophan synthase alpha chain OS=Xanthomonas cam... [more]
TRPA_RHOPA3.932e-1236.54Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_POLSQ3.932e-1233.04Tryptophan synthase alpha chain OS=Polynucleobacte... [more]
TRPA_GLUOX3.932e-1232.54Tryptophan synthase alpha chain OS=Gluconobacter o... [more]
TRPA_CALS83.932e-1237.14Tryptophan synthase alpha chain OS=Caldicellulosir... [more]
TRPA_XANOP5.136e-1233.61Tryptophan synthase alpha chain OS=Xanthomonas ory... [more]
TRPA_XANAC5.136e-1233.61Tryptophan synthase alpha chain OS=Xanthomonas axo... [more]
TRPA_SHEON5.136e-1233.04Tryptophan synthase alpha chain OS=Shewanella onei... [more]
TRPA_RHOPT5.136e-1238.14Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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