BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_KLEAE (Tryptophan synthase alpha chain OS=Klebsiella aerogenes GN=trpA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++ E    P   GFGIS PE V      GA G I GSA+VK++      P+  L EL+ F +SLK+A
Sbjct:  139 FRQAAMRHNIAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLHHLVEKLAEYHAAPPLQGFGISAPEQVSAAIDAGAAGAISGSAIVKIIERHLDEPQTMLDELKAFVQSLKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HAEIE (Tryptophan synthase alpha chain OS=Haemophilus influenzae (strain PittEE) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            V    P      ++ + + SEG+ YLVS  GVT A     + ++ TL+ ++K  +  P+  GFGI++P  V++    GA G I GSA VK++     + E+ L EL +F +++K+A
Sbjct:  151 VFICPPNADEKTIQGVAKNSEGYTYLVSRAGVTSAENQAHAANLDTLVEQLKAHNAPPILQGFGIAQPAQVKEALALGAAGAISGSATVKIIERNLDNHEQCLAELAEFVQTMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CAUSK (Tryptophan synthase alpha chain OS=Caulobacter sp. (strain K31) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE-----LEKFAKSLKSA 403
            ++L+    PTT   R+  +V  + GFVY VS  GVTG +++ +  V   +  ++++S  PVAVGFGI  P     VA   AD  +VGSA+V  +  A    E + E       + AK+++SA
Sbjct:  150 IALIRLAAPTTDDKRLPMVVRRTSGFVYYVSVAGVTGVKSADAADVAPAVARLRKASGLPVAVGFGIRTPAQAAAVAR-VADAAVVGSALVDEIEAAAQLNENVTEKVLLKASELAKAVRSA 270          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SILPO (Tryptophan synthase alpha chain OS=Silicibacter pomeroyi GN=trpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+ +   TPTT   R+  +++ + GFVY VS  G+TG+  + +  V   +  IK ++  PV VGFGI+ PE  + +A   ADG +VGSA+V  +G  +   E L  ++  +    SA
Sbjct:  148 LNFIRLATPTTDDKRLPRVLQNTSGFVYYVSITGITGSAEAEATDVGPEVARIKAATDLPVIVGFGINTPEKSRAIAS-VADGAVVGSAIVGQIGAGKPVAEVLAFVKTLSDGAHSA 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_LEPBL (Tryptophan synthase alpha chain OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 35/120 (29.17%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE-GLKELEKFAKSLKSAL 406
            ++  +   TP T  DR++++   + GF+Y V+S GVTG R +++  ++  ++ ++     PV  GFGIS  +  ++++ + A+GVI+GSA+ K++ E+ S  E  + +L  +A  +++++
Sbjct:  145 KIDFIHLVTPATTIDRIQSMKSFASGFIYYVTSYGVTGERRALAVGLKERIQMVRNKVGLPVCAGFGISTADQAKEISTY-ANGVIIGSAVQKIIEESGSNREVCISKLFTYASEIRASM 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_LEPBJ (Tryptophan synthase alpha chain OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 35/120 (29.17%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE-GLKELEKFAKSLKSAL 406
            ++  +   TP T  DR++++   + GF+Y V+S GVTG R +++  ++  ++ ++     PV  GFGIS  +  ++++ + A+GVI+GSA+ K++ E+ S  E  + +L  +A  +++++
Sbjct:  145 KIDFIHLVTPATTIDRIQSMKSFASGFIYYVTSYGVTGERRALAVGLKERIQMVRNKVGLPVCAGFGISTADQAKEISTY-ANGVIIGSAVQKIIEESGSNREVCISKLFTYASEIRASM 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CITK8 (Tryptophan synthase alpha chain OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ +++E +  P   GFGIS PE V      GA G I GSA+VKL+ +   +P + L EL+ F  ++K+A
Sbjct:  139 FRQAALRYNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLHHLVEKLQEYNAAPPLQGFGISSPEQVTGAIEAGAAGAISGSAIVKLIEKNVANPGQMLTELKAFVTAMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BURTA (Tryptophan synthase alpha chain OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +    PT+  DR+ A+ E + G+VY VS  GVTGA       ++  +  IK     PV VGFGI      + VA   AD V++GS +V+LL +A +PE    EL++F   L++A+
Sbjct:  151 IFLLAPTSTDDRIAAVGEVASGYVYYVSLKGVTGAANLDVSTIEGKIPAIKSRVPLPVGVGFGIRDAATARAVAE-VADAVVIGSRLVQLLEQA-APENAAAELKEFVAGLRAAI 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SHIDS (Tryptophan synthase alpha chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOUT (Tryptophan synthase alpha chain OS=Escherichia coli (strain UTI89 / UPEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_KLEAE6.707e-1233.07Tryptophan synthase alpha chain OS=Klebsiella aero... [more]
TRPA_HAEIE6.707e-1233.62Tryptophan synthase alpha chain OS=Haemophilus inf... [more]
TRPA_CAUSK6.707e-1235.25Tryptophan synthase alpha chain OS=Caulobacter sp.... [more]
TRPA_SILPO8.760e-1235.04Tryptophan synthase alpha chain OS=Silicibacter po... [more]
TRPA_LEPBL8.760e-1229.17Tryptophan synthase alpha chain OS=Leptospira borg... [more]
TRPA_LEPBJ8.760e-1229.17Tryptophan synthase alpha chain OS=Leptospira borg... [more]
TRPA_CITK88.760e-1232.28Tryptophan synthase alpha chain OS=Citrobacter kos... [more]
TRPA_BURTA8.760e-1237.39Tryptophan synthase alpha chain OS=Burkholderia th... [more]
TRPA_SHIDS1.144e-1131.50Tryptophan synthase alpha chain OS=Shigella dysent... [more]
TRPA_ECOUT1.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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