BQ623329

Overview
NameBQ623329
Unique NameBQ623329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.430e-18
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   46 VTFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 336
            V    IDIF GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I    + GK+ +VSV  A+G+E + ++K
Sbjct:   61 VNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          

HSP 2 Score: 28.1054 bits (61), Expect = 2.430e-18
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 3
Query:    3 EVSTSKTGKHGDAKCHL 53
            ++STSKTGKHG AK ++
Sbjct:   47 DMSTSKTGKHGHAKVNI 63          
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.580e-17
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   46 VTFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQI 324
            V  V IDIF  KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D +E  +  ++V V  A+GEE I
Sbjct:   60 VHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAI 152          

HSP 2 Score: 31.9574 bits (71), Expect = 2.580e-17
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:    3 EVSTSKTGKHGDAKCHL 53
            E+STSKTGKHG AK H+
Sbjct:   46 EMSTSKTGKHGHAKVHM 62          
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.819e-16
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   46 VTFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQINALK 336
            V  V IDIF  KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++  E  +  ++V V  A GEE I   K
Sbjct:   60 VHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          

HSP 2 Score: 31.9574 bits (71), Expect = 7.819e-16
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:    3 EVSTSKTGKHGDAKCHL 53
            E+STSKTGKHG AK H+
Sbjct:   46 EMSTSKTGKHGHAKVHM 62          
The following BLAST results are available for this feature:
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_DICDI2.430e-1844.33Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL2.580e-1750.53Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL7.819e-1647.47Eukaryotic translation initiation factor 5A-1 OS=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00420 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00420 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623329 ID=BQ623329; Name=BQ623329; organism=Citrus sinensis; type=EST; length=588bp
GGGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTGATGCTAAGTGTCAC
CTTTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGATATTGTTC
CCTCTTCCCACAACTGTGATGTTCCTCATGTCACTCGCACTGACTACCAG
CTGATTGATATCTCTGAGGATGGATTTGTTAGCCTGCTGACTGAGAATGG
CAATACCAAGGATGACCTGAGACTTCCAACTGATGAAAATCTGCTTTCAC
AGATCAAGGATGGATTTGAGAGTGGGAAAGATCTGGTTGTCTCAGTTCAG
TGTGCTATGGGAGAGGAGCAGATCAATGCCCTGAAGGACATTGGCCCCAA
GTAAAAGACTTTTTGCTTGATCGAGAATGCAGATTGCTGAAAGCTGTGGG
AAGGTGGATAGTAGTGTAGCTTACTGGTGTCCGGTTTCAAGATGAATGTC
ATCATTTCATATAAAATGACTCTTACCATATTATTAATTGTTTTCTATCG
ACAATATTTTTATTCTGTTTGATTGCTTGAAAGTTGAAACATGGTTGTTC
TCGGGGTGCAGAAGTTGTATCCGCCAACGTGACTGTAT
back to top