BQ623332

Overview
NameBQ623332
Unique NameBQ623332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8639 contig Csv1_Contig8639:68..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.766e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  232 LAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   70 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  223 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2A_PINSY2.766e-2197.87Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2D_SOLLC3.613e-2197.87Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB25_TOBAC3.613e-2197.87Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_PETSP3.613e-2197.87Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_PETSP3.613e-2197.87Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_PEA3.613e-2197.87Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_TOBAC3.613e-2197.87Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC4.718e-2197.87Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2C_SOLLC4.718e-2197.87Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC4.718e-2197.87Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00423 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623332 ID=BQ623332; Name=BQ623332; organism=Citrus sinensis; type=EST; length=356bp
TTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGG
CAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACA
ACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCG
GTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATT
GATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTG
CTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACG
GTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAATCTAGTTAC
AAGTTT
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