BQ623332

Overview
NameBQ623332
Unique NameBQ623332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8639 contig Csv1_Contig8639:68..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.898e-20
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 LAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  104 LAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  221 LAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  218 LAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.518e-19
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  210 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.589e-19
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.589e-19
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  217 LAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
The following BLAST results are available for this feature:
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2A_SPIOL2.342e-2095.74Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC8.898e-2091.49Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY1.162e-1993.62Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP1.162e-1991.49Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PINTH1.162e-1993.62Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI1.162e-1991.49Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI1.162e-1993.62Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_SOYBN1.518e-1993.62Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_TOBAC2.589e-1991.49Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ2.589e-1991.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00423 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623332 ID=BQ623332; Name=BQ623332; organism=Citrus sinensis; type=EST; length=356bp
TTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGG
CAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACA
ACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCG
GTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATT
GATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTG
CTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACG
GTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAATCTAGTTAC
AAGTTT
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