BQ623340

Overview
NameBQ623340
Unique NameBQ623340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig18 contig Csv1_Contig18:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623340 vs. ExPASy Swiss-Prot
Match: HSL2_ARATH (LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 53/226 (23.45%), Postives = 93/226 (41.15%), Query Frame = 1 
Query:    4 NSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLPK--------------------------LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG*API 603
            NS +  +P+S+ +L+                P++   ++ LR  D+S N LTG LP+                          L PNL E  + NN  +G + +N     +++   ++S N F+G L  +      LQ++   +N L+   I +       L  + +  NK+ G +P  F + P+        N+L+G IP   S  + L +L +  N   G  P+
Sbjct:  254 NSLTGEIPESIGRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQLISFNLNDNFFTGGLPDVVALNPNLVEFKIFNNSFTGTLPRN-LGKFSEISEFDVSTNRFSGELPPYLCYRRKLQKIITFSNQLSG-EIPESYGDCHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANNFSGVIPV 477
The following BLAST results are available for this feature:
BLAST of BQ623340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HSL2_ARATH9.785e-1123.45LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00431 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00431 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623340 ID=BQ623340; Name=BQ623340; organism=Citrus sinensis; type=EST; length=656bp
TCCAACTCGTTCTCCAGCTCAGTCCCCGACTCACTCACCCAGCTCAAAAA
TCTCGATTCTTTAGACCTTTCTTATAATTCTCTATCCGGGTCTCTCCCAA
AAAACACATTTTTGATGTCGAGTTTGAGAAGACTCGATCTGAGTTACAAC
AAGCTCACCGGTTCATTACCAAAGCTGCCGCCAAATCTCTCAGAGCTAGC
TCTGAAGAACAATGTTTTATCTGGGGTTATTACAAAGAACTCCTTTGACG
GATTAACTCAGCTGGAAGTTATCGAACTCAGCGAAAACTCGTTCACCGGG
ACACTTGAAGCGTGGTTCTTCCTGTTGCCAGCACTCCAGCAAGTTAACCT
ATCCAATAACACCTTGACACGCGTCGGGATCTCGAAGCCAGTGGATGGCA
GAAGCGACCTGGTGGCGGTTGATCTGGGGTTCAACAAGATCCAAGGGTAC
TTGCCCGTGAATTTCGCTGATTATCCGATGCTGTCGTCTCTGTCGATGCG
TTACAACCGATTACGCGGCGGTATCCCATTGGAGTTCAGTCACAAGAAGT
CTTTGAAGAGGCTGTTTCTGGATGGGAACTTCTTGATTGGGTAAGCACCG
ATAGGATTTTTCAGTGGTGACCTGCCGGTCGCCCGGAGACTGGGGGATAA
TTGTCT
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