BQ623348

Overview
NameBQ623348
Unique NameBQ623348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12595 contig Csv1_Contig12595:544..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623348 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 3
Query:   39 TNQTYCIAMDGVDTKTLQAALDWACGPGRANCSDIQPGEPCYQPNNVKSHASYAFDSYYHEQGKTSGSCDFKGVAMITTTDPSHGS-CIFPGSKKVSNKTKAVVNSTQISG 368
            +N  YC+  +G + + LQ A+D+ACG G A+C+ IQP   CYQPN VK+H   A +SYY ++  +  +CDF G A  +TT PS  S C+   S   +  T      T  SG
Sbjct:   17 SNAAYCLCKEG-NEQVLQKAIDYACGNG-ADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTASNCLTGSSSSGTPTTGTPTTGTPTSG 125          
BLAST of BQ623348 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.292e-16
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 3
Query:   51 YCIAMDGVDTKTLQAALDWACGPGRANCSDIQPGEPCYQPNNVKSHASYAFDSYYHEQGKTSGSCDFKGVAMITTTDPSHGSC 299
            +C+A DG +   LQ  +++ACG    +C  IQ G  C+ PN++++HASY  ++YY   G T  +CDFKG  ++T++DPS+G C
Sbjct:  377 WCVAKDGANGTDLQNNINYACG--FVDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457          
BLAST of BQ623348 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   45 QTYCIAMDGVDTKTLQAALDWACGPGRANCSDIQPGEPCYQPNNVKSHASYAFDSYYHEQGKTSGSCDFKGVAMITTTDPSHGSCIFP 308
            Q +C+ ++G +   L+  L  AC      C+ + PG  CY+P ++  HASYA +SY+ +    S  C F G+A  TTT+P +  C FP
Sbjct:  387 QVWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKFP 474          
The following BLAST results are available for this feature:
BLAST of BQ623348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
E13L4_ARATH7.877e-1740.54Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E13B_WHEAT2.292e-1642.17Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
EA6_ARATH9.013e-1336.36Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00439 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00439 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623348 ID=BQ623348; Name=BQ623348; organism=Citrus sinensis; type=EST; length=609bp
ATGTGTCGGGAAGTGGGACATTTTTGGCCAACGATACAACAAACCAGACA
TATTGTATTGCAATGGATGGTGTTGATACAAAGACATTGCAGGCAGCACT
GGATTGGGCGTGTGGCCCTGGGAGAGCTAATTGTAGTGATATTCAACCTG
GGGAACCTTGTTATCAGCCTAATAATGTGAAGAGCCACGCTTCTTATGCC
TTTGATAGCTATTACCATGAGCAAGGGAAGACTTCCGGGTCTTGTGATTT
CAAGGGCGTGGCGATGATCACCACAACGGACCCAAGTCATGGGAGCTGTA
TATTTCCTGGCAGTAAGAAGGTAAGCAATAAGACGAAAGCAGTTGTAAAC
TCAACTCAAATAAGTGGAGCAGCAGATAGGCTGAGATTCATCTCCCTCCG
CGGCAACCAAATAAGCGCAAATGCTGTAGCTTTTTCTATTTTGTTATTCA
TTCCCTTTATGACTCCGTGGTGGGGTGTCCAGTCATCTTTTTCCTTTTTT
TTTCCCCCACATGTATCATTGTTTTGCTTTTGAATTTGTTGGTAATCAAG
AGCTGCTGCAGGGAGTTGTTGTTTAGTGGGTAGATTCAGTAGAAGTGCAT
GTGATAATT
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