BQ623351

Overview
NameBQ623351
Unique NameBQ623351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            YRGVR R WGK+ +EIR P+K   R+WLGT+ T + AA A+D AA  ++GS A LNFP L
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKK-TRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPEL 137          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLLG 588
            YRG+R R  GK+ +EIR+PKK   RVWLGTY TPE AA AYD AA  ++G    LNFP  LG
Sbjct:   90 YRGIRCRS-GKWVSEIREPKKT-TRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLG 149          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            +RGVR R WGK+ AEIR+P + G+R+WLGT+ T + AA AYD+AA  M G  A+LNFP
Sbjct:   79 FRGVRQRIWGKWVAEIREPNR-GSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP 135          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLLGRGN 597
            +RGVR R WG + +EIR P     RVWLGT+DT E AA AYD+AA  M G  AK NFP +   G+
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGS 70          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  391 KVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            K+  Y+GVR R WG +  EIR P +   R+WLG+Y T E AA AYD A   ++G KA LNFP++
Sbjct:   39 KIKKYKGVRMRSWGSWVTEIRAPNQK-TRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNI 101          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNF 573
            + GVR RPWG+++AEIRD +    R WLGT+DT E AA AYD AA  +RG+KAK NF
Sbjct:  116 FMGVRKRPWGRWSAEIRD-RIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNF 171          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  355 TAGLAARDRDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLLG 588
            +AGL +R +D      YRG+R R  GK+ +EIR+P+K   R+WLGTY   E AA AYD AA  ++G +A LNFP  +G
Sbjct:    7 SAGLGSRRKDPV----YRGIRCRS-GKWVSEIREPRKT-TRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVG 78          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  403 YRGVRTRP-WGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPH 579
            YRGVR R    K+ +EIR+P+K   R+WLGT+ TPE AA+AYD AA  ++GS+A+LNFP+
Sbjct:   15 YRGVRQRKNSNKWVSEIREPRKPN-RIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPN 73          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            +RGVR R WG + +EIR P     RVWLGT++T E AA AYD+AA  M G  AK NFP
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFP 63          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  385 QAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            ++K+  Y+GVR R WG + +EIR P +   R+WLG+Y T E AA AYD A   ++G +A LNFP
Sbjct:   44 KSKIKKYKGVRMRSWGSWVSEIRAPNQK-TRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106          
The following BLAST results are available for this feature:
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ERF36_ARATH5.947e-1256.67Ethylene-responsive transcription factor ERF036 OS... [more]
ERF26_ARATH5.947e-1259.68Ethylene-responsive transcription factor ERF026 OS... [more]
DRE2A_ARATH5.947e-1258.62Dehydration-responsive element-binding protein 2A ... [more]
SHN3_ARATH1.325e-1153.85Ethylene-responsive transcription factor SHINE 3 O... [more]
ERF13_ARATH1.325e-1150.00Ethylene-responsive transcription factor ERF013 OS... [more]
ERF84_ARATH1.730e-1159.65Ethylene-responsive transcription factor ERF084 OS... [more]
ERF27_ARATH2.951e-1148.72Ethylene-responsive transcription factor ERF027 OS... [more]
ERF24_ARATH3.855e-1156.67Ethylene-responsive transcription factor ERF024 OS... [more]
SHN2_ARATH5.034e-1156.90Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF12_ARATH5.034e-1148.44Ethylene-responsive transcription factor ERF012 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00442 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00442 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623351 ID=BQ623351; Name=BQ623351; organism=Citrus sinensis; type=EST; length=706bp
TTTTCAGAATCGGATTTTGATCTTCTTCAAAATCTTCTCGAGGACGTAAA
CACAGCCTCATCTTTTGAATCGGATTACTTAAACAATGCACCCTCCGTGT
ACTCACCAACTTCGAGCTTCGGCAGTGCCGTCTTTGATTTTCCACTACAA
GTAACAGGTAATGTTGTTATTAACAATAACAACAACTACCCAATCCCTTC
CTATGGCTGCTATGATCATCCCAAAGCCTTAAACGACGCCGTTGACAGCG
TGGGTTGGATTTCCTTTGATCATCATCAAGCTGATCAGGATGATCAAGCA
ATAAGCGAAGCCGCCGCAGCCGCCGCTACCCTTGATATGGTGACTTACCA
CCAGACGGCGGGGTTGGCAGCACGTGATCGTGATCAGGCGAAGGTGGTGC
ATTACAGGGGGGTGAGGACGAGGCCATGGGGGAAATATGCGGCTGAGATT
AGAGACCCTAAGAAGAACGGGGCACGTGTTTGGCTTGGCACTTATGATAC
CCCTGAGGGCGCAGCCTTGGCTTATGATAAAGCCGCGTTCGAGATGCGTG
GCTCTAAAGCTAAGCTTAATTTTCCTCACTTACTTGGCAGGGGTAATTTT
AAGCCCGGTCGTGTCACACCACCAACACCACTAAGCGTGGCTCACCAGAG
TCCGAGCCTGAGCTTTCTCCTACTTCTTCATCTTCTTCCTCTTCTTCGGC
TACTTC
back to top