BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 86/215 (40.00%), Postives = 133/215 (61.86%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDY--LAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E VI P++ P++F+  +   P KG+LLYGPPGTGK+ LAKA+A E  + F ++  S++++KW GD++KLV  +F +A +   ++IFIDEVDS    R   + E+   +KTEF+   +G   D +  ++VLAATN P  LD AI RR  +   IG+P+ + RA++ ++ + G      +  DY  LA L EG++GSD+  + K A    +R
Sbjct:  144 KEYLKEAVIFPIKFPQMFTGNRK--PWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQESESARRIKTEFLIQMNGVGNDSDG-ILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHI-GSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVR 354          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.660e-37
Identity = 94/215 (43.72%), Postives = 128/215 (59.53%), Query Frame = 3
Query:   21 ELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS----DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            E+V LPL+ PELF    ++ P KGVLLYGPPGTGKT+LAKA+A+E+ A F+ V  S L+ K+ G+  KLV  VF LA +  P IIFIDE+D+   +R  S    D E    +  + +A  DGF  D    V ++AATNRP  LD AILR  R  +  EI  PD   R +I K+      + +++D   +A + E   G+D+  VC +A  F+IRE
Sbjct:  162 EVVELPLKNPELFEKVGIV-PPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTL-MQLLAEMDGF--DSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIRE 371          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 86/216 (39.81%), Postives = 131/216 (60.65%), Query Frame = 3
Query:   21 ELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            ELV LPLR P+LF   K +G  P KG+LLYGPPG+GKT++A+A+A E+GA F  +    +MSK  G+++  +   F  A K  P+IIFIDE+DS   +R  +  E    + ++ + L DG  +   A V+V+ ATNRP+ +D A+ R  R  +  +IG+PD   R ++L +  K  K+ E +D + ++    G+ G+DL  +C +AA   IRE +D
Sbjct:  222 ELVELPLRHPQLF---KSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 432          

HSP 2 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 86/223 (38.57%), Postives = 129/223 (57.85%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHE---ALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            +K+ L E V  P+  PE F    +  P KGVL YGPPG GKT+LAKAIA E  A FI+V+   L++ WFG+++  V  +F  A +  P ++F DE+DS   QR +S  +   A   +  + +   DG    +   V ++ ATNRP  +D A+LR  RL Q   I +PD   R QI K  L+   + ++ID   LA   +GF+G+D+ E+C++A  ++IRE ++
Sbjct:  489 VKRELQETVQYPVEPPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKKT--VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIRENIE 708          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.949e-37
Identity = 91/215 (42.33%), Postives = 129/215 (60.00%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E + LPL  PELF    +  P KGVLLYGPPGTGKT+LA+AIA    A F+ V  S ++ K+ G++ +L+  +F+ A + QP IIF+DE+D+  G+R    TS    +     E +   DGF  DQ  +V ++ ATNRP  LD A+LR  RL +  EI +P+ + R +ILK+   G      ID++ +  L EGF G+DL  +C +A  F+IR
Sbjct:  151 LRESIELPLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIR 362          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.771e-36
Identity = 93/217 (42.86%), Postives = 126/217 (58.06%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            Q L E V LPL  PE F+   +  P KGVLLYG PGTGKT+LAKA+A  + A FI V  S L+ K+ GD  KLV  +F +A K  P+IIFIDE+DS   +R    T     +     + +A  DGF  D+   + ++AATNRP  LD AILR  R  +   + MP  + R +ILK+  +   + E+IDF  LA   EG +G+DL  +  +A  F++R
Sbjct:  169 QELQEAVELPLTSPERFARIGI-EPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGF--DKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVR 382          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.313e-36
Identity = 93/218 (42.66%), Postives = 129/218 (59.17%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            Q L E + LPL+ PELF    +  P KGVLLYGPPG GKT++AKA+A E  A FI V  S L+ K+ G+  +LV  +F LA +  P IIFIDE+D+   +R    T     +     + +A  DGF  D    V V+AATNRP  LD A+LR  R  +  E+ +PD + R +ILKV  +  K+ +N+D   +A + EG +G+DL  +  +A  F+IRE
Sbjct:  150 QELREAIELPLKHPELFEEVGI-DPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGF--DPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRE 363          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 88/217 (40.55%), Postives = 133/217 (61.29%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL-KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K+AL E VILP++ P LF+  +   P +G+LL+GPPGTGK+ LAKA+A E+  + F ++  S+L+SKW G+++KLV  +F LA + +P+IIFIDE+DS  G R  ++ EA   +KTEF+    G   D N  ++VL ATN P  LD AI RR  +   I +P+   RA + K+ L   +      DF  L    EG++G+D+  + + A    +R++
Sbjct:  143 KEALKEAVILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRKV 356          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 87/220 (39.55%), Postives = 132/220 (60.00%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR-RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            +K+ + E V LPL +P++F   K LG  P KG LLYGPPG GKT+LAKA+A ES A FI+++   ++SKW G+++K +  +F  A ++ PAI+F+DE+DS   +R  TSD      +  + +   DG        V+V+ ATNRP  +D A+LR  R  +   I  PD++ R  ILKV  K   +  ++D + +A   EG+ G+DL  +C++A   + RE
Sbjct:  475 VKREIKETVELPLLKPDVF---KRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVMNG--VVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLENLCREAGMNAYRE 689          

HSP 2 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 81/218 (37.16%), Postives = 129/218 (59.17%), Query Frame = 3
Query:   21 ELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKG-----EKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 653
            E++ LPL+ PELF    +  P KGV+LYGPPGTGKT++A+A+A ESGA F+++    +MSK++G +++ +  +FS A +  P+IIFIDE+DS   +R     E    +  + + L DG    +   V+V+ ATNR   +D A+ R  R  +  EIG+PDR  R +IL +  +       + E+N   + +A    GF G+DL  + +++A  ++R  L
Sbjct:  204 EMIELPLKHPELFERLGIT-PPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEVQGEVERRVVAQLLTLMDGM--KERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAALVRESAMNALRRYL 418          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 90/215 (41.86%), Postives = 127/215 (59.07%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E + LPL  PELF    +  P KGVLLYGPPGTGKT+LA+AIA    A F+ V  S ++ K+ G++ +L+  +F+ A + QP IIF+DE+D+  G+R    TS    +     E +   DGF  D   +V ++ ATNRP  LD A+LR  RL +  EI +P+ + R  ILK+   G      ID++ +  L EGF G+DL  +C +A  F+IR
Sbjct:  151 LRESIELPLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIR 362          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 86/217 (39.63%), Postives = 133/217 (61.29%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL-KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K+AL E VILP++ P LF+  +   P +G+LL+GPPGTGK+ LAKA+A E+  + F ++  S+L+SKW G+++KLV  +F LA + +P+IIFIDE+DS  G R  ++ EA   +KTEF+    G   D N  ++VL ATN P  LD AI RR  +   I +P+   RA + ++ L   +      DF  L    +G++G+D+  + + A    +R++
Sbjct:  143 KEALKEAVILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
VPS4_DICDI3.568e-3740.00Vacuolar protein sorting-associated protein 4 OS=D... [more]
PSMR_METVS4.660e-3743.72Proteasome-activating nucleotidase OS=Methanococcu... [more]
CDC48_CAPAN6.087e-3739.81Cell division cycle protein 48 homolog OS=Capsicum... [more]
PS10B_ARATH7.949e-3742.3326S protease regulatory subunit S10B homolog B OS=... [more]
PSMR_METMA1.771e-3642.86Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_PYRAB2.313e-3642.66Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
VPS4B_BOVIN3.021e-3640.55Vacuolar protein sorting-associated protein 4B OS=... [more]
VAT_THEAC3.021e-3639.55VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
PS10A_ARATH3.021e-3641.8626S protease regulatory subunit 10B homolog A OS=A... [more]
VPS4B_MOUSE5.153e-3639.63Vacuolar protein sorting-associated protein 4B OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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