BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E++ LPL  PELF    ++ P KG LLYGPPGTGKT+LA+A+A +    F+ V  S+++ K+ G++ +L+  +F+ A   QP IIF+DE+D+  G+R    TS    +     E +   DGF  D   RV ++ ATNRP  LD A+LR  RL +   I +P+ + R  ILK+          ID++ +  L +GF G+DL  VC +A  F+IR
Sbjct:  145 LREVIELPLTNPELFQRVGII-PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIR 356          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E++ LPL  PELF    ++ P KG LLYGPPGTGKT+LA+A+A +    F+ V  S+++ K+ G++ +L+  +F+ A   QP IIF+DE+D+  G+R    TS    +     E +   DGF  D   RV ++ ATNRP  LD A+LR  RL +   I +P+ + R  ILK+          ID++ +  L +GF G+DL  VC +A  F+IR
Sbjct:  145 LREVIELPLTNPELFQRVGII-PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIR 356          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E++ LPL  PELF    ++ P KG LLYGPPGTGKT+LA+A+A +    F+ V  S+++ K+ G++ +L+  +F+ A   QP IIF+DE+D+  G+R    TS    +     E +   DGF  D   RV ++ ATNRP  LD A+LR  RL +   I +P+ + R  ILK+          ID++ +  L +GF G+DL  VC +A  F+IR
Sbjct:  145 LREVIELPLTNPELFQRVGII-PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIR 356          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 89/216 (41.20%), Postives = 125/216 (57.87%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E V LPL+ PELF    +  P KGVLLYGPPG GKT++AKA+A    A FI V  S L+ K+ G+  +LV  +F +A +  P IIFIDE+D+   +R    T     +     + +A  DGF  D    V V+AATNRP  LD A+LR  R  +  E+ +PD + R +ILKV  +   +  N+D   +A + EG +G+DL  +  +A  F+IR+
Sbjct:  150 LREAVELPLKHPELFEKVGI-EPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGF--DPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRD 361          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E++ LPL  PELF    ++ P KG LLYGPPGTGKT+LA+A+A +    F+ V  S+++ K+ G++ +L+  +F+ A   QP IIF+DE+D+  G+R    TS    +     E +   DGF  D   RV ++ ATNRP  LD A+LR  RL +   I +P+ + R  ILK+          ID++ +  L +GF G+DL  VC +A  F+IR
Sbjct:  145 LREVIELPLTNPELFQRVGII-PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIR 356          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 89/218 (40.83%), Postives = 126/218 (57.80%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            Q L E + LPL+ PELF    +  P KGVLLYGPPG GKT++AKA+A    A FI V  S L+ K+ G+  +LV  +F LA +  P IIFIDE+D+   +R    T     +     + +A  DGF  D    V V+AATNRP  LD A+LR  R  +  E+ +PD + R +ILKV  +   + + +D   +A + EG +G+DL  +  +A  F+IR+
Sbjct:  148 QELREAIELPLKHPELFEQVGI-EPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGF--DPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRD 361          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            L E+V LPL  PELF    +  P KGVLLYGPPGTGKT+LA+AIA    A F+ V  S ++ K+ G++ +++  +F  A   QP +IF+DE+D+  G+R    TS    +     E +   DGF  D  ++V ++ ATNRP  LD A+LR  RL +  EI +P+   R  +LK+         ++D++ +A L +GF  +DL  VC +A  F+IR
Sbjct:  149 LREVVELPLMIPELFIRVGIKAP-KGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIR 360          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 83/211 (39.34%), Postives = 128/211 (60.66%), Query Frame = 3
Query:   21 ELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            EL+ LPL+ PE+F    +  P KGVL++G PGTGKT +AKAIA ES A    +    +MSK  G++++ +  +F  A +  P IIFIDE+DS   +R  S++E    + ++ + L DG   + N  V+VLAATNRP+ +D A+ R  R  +  EI +PD + R +IL    K  K++ +++   +A  C G+ G+DL ++C +AA   I+E
Sbjct:  541 ELIELPLKYPEIFMSIGISAP-KGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNN--VLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHGYVGADLAQLCFEAAIQCIKE 748          

HSP 2 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 82/220 (37.27%), Postives = 129/220 (58.64%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT-SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 653
            +K+ L E ++ PL    L++        KG+LLYGPPG GKT+LAKAIA E  A FI+V+   L++ WFG+++  V  +F  A    P IIF DE+DS   +R + ++++A   +  + +   DG   ++   + ++AATNRP  LD+A+ R  RL +   I +PD K R  I K ILK   + E++D   +A   EGF+G+D+  +C+ A   +I+E +
Sbjct:  942 VKEQLKETILYPLEYKHLYNKFNS-NYNKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGI--NEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEGFSGADITNLCQSAVNEAIKETI 1158          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 91/220 (41.36%), Postives = 126/220 (57.27%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            + L E+V  PL  PE + +   LG  P KGVLLYGPPGTGKT+ A+A+A  + A FI V  S L+ K+ G+  ++V  +F +A   +  +IF DE+D+  G R    +  D+E    M  E +   DGF  D    + VL ATNRP  LD A++R  RL +  E  +PD   RA ILK+  K   VE +I +D LA LC   TG+++  VC +A  F+IR
Sbjct:  187 EKLREVVETPLLHPERYVN---LGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTM-LELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIR 400          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 89/218 (40.83%), Postives = 123/218 (56.42%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            + L E+V +PL  PE F +  +  P KGVL+YGPPGTGKT+ A+A+A  + A F+ V  S L+ K+ G+  ++V  +F +A   +  IIF DEVD+  G R       D+E    M  E +   DGF  D    + VL ATNRP  LD A+LR  RL +  E G+PD + RA I  +  K      +I F+ LA LC   TG+D+  VC +A  F+IR
Sbjct:  180 EKLREVVEMPLLHPEKFVNLGI-DPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTM-LELINQLDGF--DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 393          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
PRS10_SPETR9.717e-3540.0026S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE9.717e-3540.0026S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN9.717e-3540.0026S protease regulatory subunit S10B OS=Homo sapie... [more]
PSMR_THEGJ1.658e-3441.20Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS10_BOVIN1.658e-3440.0026S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_PYRKO2.827e-3440.83Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS10_DICDI2.827e-3440.0026S protease regulatory subunit S10B OS=Dictyostel... [more]
CDAT_PLAF72.827e-3439.34Putative cell division cycle ATPase OS=Plasmodium ... [more]
PRS7_CAEEL3.693e-3441.3626S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7_DICDI6.299e-3440.8326S protease regulatory subunit 7 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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