BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 108/219 (49.32%), Postives = 149/219 (68.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +++HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D D    LA + EG++GSDL  + K AA   IREL
Sbjct:  516 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLL--QKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIREL 730          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 107/219 (48.86%), Postives = 149/219 (68.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +S+HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D +    LA + +G++GSDL  + K AA   IREL
Sbjct:  492 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 706          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 107/219 (48.86%), Postives = 149/219 (68.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +++HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D +    LA + EG++GSDL  + K AA   IREL
Sbjct:  511 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIREL 725          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 107/219 (48.86%), Postives = 149/219 (68.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +S+HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D +    LA + +G++GSDL  + K AA   IREL
Sbjct:  492 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 706          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 107/219 (48.86%), Postives = 149/219 (68.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +S+HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D +    LA + +G++GSDL  + K AA   IREL
Sbjct:  492 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 706          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 107/219 (48.86%), Postives = 149/219 (68.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +S+HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D +    LA + +G++GSDL  + K AA   IREL
Sbjct:  492 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 706          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 99/218 (45.41%), Postives = 140/218 (64.22%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENI---DFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K  L E VILP   P LFS   L  P KG+LL+GPPG GKT+LAKA+A ES  +F N+  S+L SKW GD++K +  +F +A   QP+IIFIDE+DS L +R   D E    MKTEF+  +DG T+  + R++V+ ATNRP ELD+A+LRR P+   + +PD + R +++   LK   + + +   D  Y+A    GF+ SDL+ +CK+AA   +RE+
Sbjct:  278 KATLEEAVILPALNPNLFSG--LRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEKDAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVREI 493          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.017e-48
Identity = 107/219 (48.86%), Postives = 148/219 (67.58%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  LQP+IIFIDEVDS L +R + +HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D D    L+ + +G++GSDL  + K AA   IREL
Sbjct:  522 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIREL 736          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.017e-48
Identity = 107/219 (48.86%), Postives = 148/219 (67.58%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  LQP+IIFIDEVDS L +R + +HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D D    L+ + +G++GSDL  + K AA   IREL
Sbjct:  522 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIREL 736          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.017e-48
Identity = 97/218 (44.50%), Postives = 147/218 (67.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+AL E+V+LP +RP++F+   L  P KGVLL+GPPGTGKTM+ + +A ++ A F N+  S+L SKW G+ +KLV A+FS+A    P++IFIDE+DS L  R  S+HE+   +KTEF+   DG  T  + R++VL ATNRP ELDEA  RR  +   I +P+   R QI++ +L+G + E  + + + +  L +G++G+D+ ++C +AA   IRE+ D
Sbjct:  325 KKALKEIVVLPFQRPDIFTG--LRAPPKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEITDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGD 540          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
SPAST_DROGR1.182e-4849.32Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROYA1.544e-4848.86Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROWI1.544e-4848.86Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROSE1.544e-4848.86Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME1.544e-4848.86Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER1.544e-4848.86Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
SPAST_CAEBR1.544e-4845.41Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_DROPS2.017e-4848.86Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE2.017e-4848.86Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
FIGL1_CAEBR2.017e-4844.50Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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