BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 80/212 (37.74%), Postives = 114/212 (53.77%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAA 629
            KQ L E+V   L+ P  F+   GKL    KG+LL G PGTGKT+LAKAIA E+G  F     S     + G   + V ++F  A K  P IIFIDE+D+ +G  R            + +   DGF  +QN  ++V+AATN P  LD A+ R  R  +   +  PD + R +IL++ L+G+ + E++D   +A    GF G+DL  +   AA
Sbjct:  371 KQELEEVVEY-LKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA-VGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAA 575          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.524e-24
Identity = 71/216 (32.87%), Postives = 116/216 (53.70%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHE--ALTNMKTEFMALWDGFTTDQ--NARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKER-AQILKVILKGEKVEENIDFDYLA-GLCEGFTGSDLLEVCKQA 626
            +K A+ E + LPL RPELF+ G  +  + G+L YGPPGTGKT+LAKAIA E    F +V+   L++ + G+++  V  VF  A   +P ++F DE+DS   +R         +  + ++ +A  DG +  +     V V+ ATNRP  LD A+LR  R  +   +G+ D  ++   I++ + +   +   +    +A  L   +TG+D   +C  A
Sbjct:  999 VKDAITETIQLPLERPELFAKG--MKKRSGILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDA 1212          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 76/203 (37.44%), Postives = 108/203 (53.20%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR---------TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDY------LAGLCEGFTGSDLLEVCKQAAYFSIR 644
            +G +L GPPGTGKT+LAKA A E+   F++V  S  +  + G     V  +F+ A  + P+IIFIDE+D+ +G+ R           + EA  N   + +   DGFTT    +V+VLA TNRP  LD A++R  R  +  +I  PD   R QI  V LK   ++  +  D       LA L  GFTG+D+   C +AA  + R
Sbjct:  322 RGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDA-IGKERGKGGALGGANDEREATLN---QLLVEMDGFTTSD--QVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAAR 518          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 79/224 (35.27%), Postives = 121/224 (54.02%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFL----GQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            K+ L E+V   LR PE +     LG  P +GVLL G PGTGKT+LAKA+A E+   FI+   S  +  + G     V  +F+ A K  P+IIFIDE+D+      G+ R   ++       + +   DGF  D N+ V+VL ATNR   LD A+ R  R  +   +  PD+  R  IL+V +  +++   ++++   +A +  GFTG+DL  +  +AA  + R+
Sbjct:  334 KEELEEIVEF-LRNPEKYVR---LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGF--DSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRK 551          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 79/222 (35.59%), Postives = 115/222 (51.80%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            KQ   E+V   L+ PE F+      P KGVLL GPPGTGKT+LAKAIA E+G  F ++  S  +  + G     V  +F  A    P ++FIDE+D+        +G       + L  + TE     DGF       V+V+AATNRP  LD A+LR  R  +   +G+PD + R +IL V    ++++  +    +A    GF+G+DL  +  +AA  + R
Sbjct:  230 KQDFQEIVQF-LKFPEKFTAVGARTP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM----DGFGGGDGG-VVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGR 444          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 82/224 (36.61%), Postives = 113/224 (50.45%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E+V   LR P  F    GK+    KG LL GPPGTGKT+LAKAIA E+   F ++  S+ +  + G     V  +F    +  P IIFIDE+D+        +G       + L  M  E     DGF  + N  V+++AATNRP  LD A+LR  R  +   +  PD   R QILKV LK  K    +    +A    GF+G++L  +  +AA  + R
Sbjct:  164 KEELTEIVDF-LRDPSKFQKLGGKI---PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEM----DGF--EANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAAR 377          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 82/224 (36.61%), Postives = 113/224 (50.45%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E+V   LR P  F    GK+    KG LL GPPGTGKT+LAKAIA E+   F ++  S+ +  + G     V  +F    +  P IIFIDE+D+        +G       + L  M  E     DGF  + N  V+++AATNRP  LD A+LR  R  +   +  PD   R QILKV LK  K    +    +A    GF+G++L  +  +AA  + R
Sbjct:  164 KEELTEIVDF-LRDPSKFQKLGGKI---PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEM----DGF--EANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAAR 377          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 82/224 (36.61%), Postives = 113/224 (50.45%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E+V   LR P  F    GK+    KG LL GPPGTGKT+LAKAIA E+   F ++  S+ +  + G     V  +F    +  P IIFIDE+D+        +G       + L  M  E     DGF  + N  V+++AATNRP  LD A+LR  R  +   +  PD   R QILKV LK  K    +    +A    GF+G++L  +  +AA  + R
Sbjct:  164 KEELTEIVDF-LRDPSKFQKLGGKI---PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEM----DGF--EANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAAR 377          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 82/224 (36.61%), Postives = 113/224 (50.45%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E+V   LR P  F    GK+    KG LL GPPGTGKT+LAKAIA E+   F ++  S+ +  + G     V  +F    +  P IIFIDE+D+        +G       + L  M  E     DGF  + N  V+++AATNRP  LD A+LR  R  +   +  PD   R QILKV LK  K    +    +A    GF+G++L  +  +AA  + R
Sbjct:  164 KEELTEIVDF-LRDPSKFQKLGGKI---PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEM----DGF--EANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAAR 377          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23
Identity = 76/221 (34.39%), Postives = 116/221 (52.49%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR--VMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K+ L E+V   LR P  F+   GKL    +GVLL GPPGTGKTMLA+A+A E+   F  +  S     + G   K V  +F+ A K  P+IIFIDE+D+   +R   D   +     + +   DGF+ +++    V+ + ATN P  LD A+ R  R  +   + +PD + R  IL    +   + +++D   +A    GF G+DL  +  QAA ++ + L
Sbjct:  276 KEELEEIVDF-LRDPTHFTRLGGKL---PRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNL 492          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
FTSHB_ARATH3.464e-2437.74Cell division protease ftsH homolog 11, chloroplas... [more]
PEX6_NEUCR4.524e-2432.87Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
AFG3_YEAST5.909e-2437.44Mitochondrial respiratory chain complexes assembly... [more]
FTSH7_ARATH1.008e-2335.27Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH6_ORYSJ1.316e-2335.59Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_RICTY1.719e-2336.61Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR1.719e-2336.61Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE1.719e-2336.61Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN1.719e-2336.61Cell division protease ftsH homolog OS=Rickettsia ... [more]
YME1_SCHPO2.933e-2334.39Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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