BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLAYKLQPA--------IIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKV---ILKGEK-VEENIDFDYLAGLCEGFTGSDL 605
            KG+LLYGPPG GKT+LA+ I K   A     V    +++K+ G+++  +  +F+ A + Q          II  DE+D+   QR      T  H+ + N   + ++  DG   +Q   ++V+  TNRP  +DEA+LR  RL    EIG+PD K R QIL +    ++G + +  ++D   LA   + F+G++L
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVN---QLLSKIDG--VEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAEL 441          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLAYKLQPA--------IIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKV---ILKGEK-VEENIDFDYLAGLCEGFTGSDL 605
            KG+LLYGPPG GKT+LA+ I K   A     V    +++K+ G+++  +  +F+ A + Q          II  DE+D+   QR      T  H+ + N   + ++  DG   +Q   ++V+  TNRP  +DEA+LR  RL    EIG+PD K R QIL +    ++G + +  ++D   LA   + F+G++L
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVN---QLLSKIDG--VEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAEL 441          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLAYKLQPA--------IIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKV---ILKGEK-VEENIDFDYLAGLCEGFTGSDL 605
            KG+LLYGPPG GKT+LA+ I K   A     V    +++K+ G+++  +  +F+ A + Q          II  DE+D+   QR      T  H+ + N   + ++  DG   +Q   ++V+  TNRP  +DEA+LR  RL    EIG+PD K R QIL +    ++G + +  ++D   LA   + F+G++L
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVN---QLLSKIDG--VEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAEL 441          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLAYKLQPA--------IIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKV---ILKGEK-VEENIDFDYLAGLCEGFTGSDL 605
            KG+LLYGPPG GKT+LA+ I K   A     V    +++K+ G+++  +  +F+ A + Q          II  DE+D+   QR      T  H+ + N   + ++  DG   +Q   ++V+  TNRP  +DEA+LR  RL    EIG+PD K R QIL +    ++G + +  ++D   LA   + F+G++L
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVN---QLLSKIDG--VEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAEL 441          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLAYKLQPA--------IIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKV---ILKGEK-VEENIDFDYLAGLCEGFTGSDL 605
            KG+LLYGPPG GKT+LA+ I K   A     V    +++K+ G+++  +  +F+ A + Q          II  DE+D+   QR      T  H+ + N   + ++  DG   +Q   ++V+  TNRP  +DEA+LR  RL    EIG+PD K R QIL +    ++G + +  ++D   LA   + F+G++L
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVN---QLLSKIDG--VEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAEL 441          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 62/195 (31.79%), Postives = 99/195 (50.77%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA---------------KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL----QPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVIL 527
            + + + V LP    +LF H   L P KGVLLYGPPG GKT++AKA+A               K++ + F+N++   L++K+ G+ ++ +  +F  A +      P I+F DE+DS    R +    +  T +  + ++  DG    +N  V+V+ A+NR   +D AILR  RL    +I  PD +    I    L
Sbjct:  244 EQIRDAVELPFLHKDLF-HEYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEIDGVEGLEN--VIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDIFSKYL 435          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 67/211 (31.75%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAI-----AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPA--------IIFIDEVDSFLGQR--RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQIL----KVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            KG+LLYGPPGTGKT++A+ I     AKE       V    ++SK+ G +++ +  +F  A     A        II  DE+DS   QR  R        N+  + +A  DG   DQ   ++V+  TNR   +D A+LR  R     EI +PD K R QI     K + +   + ++++   LA L + F+G+++  + K A+ F+I + ++
Sbjct:  275 KGLLLYGPPGTGKTLIARKIGTMLNAKEPKI----VNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTGVGDNVVNQLLAKMDG--VDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVN 479          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 65/209 (31.10%), Postives = 108/209 (51.67%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLA----YKLQP----AIIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKG----EKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 653
            KG+LLYGPPGTGKT++A+ I     A     V    ++ K+ G+++  V  +F+ A     +L P     II  DE+D+   QR      +  H+ + N   + +   DG   DQ   ++V+  TNR   +DEA+LR  RL    EI +P+ + R QIL +  K      K+ +++D   +A L + F+G++L  + + A   ++  L+
Sbjct:  254 KGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDTVVN---QLLTKIDG--VDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQSSAMNRLI 457          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI---------------AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL----QPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQI 512
            + + + V LP    EL+     L P KGVLLYGPPG GKT++AKA+               A+E+ + F+N++   L++K+ G+ ++ +  +F  A +      P I+F DE+DS    R T    +  T +  + ++  DG    +N  V+V+ A+NR   +D AILR  RL    +I  PD +    I
Sbjct:  262 EQIRDAVELPFLHKELYRE-YALRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAREAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLEN--VIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDI 448          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.735e-16
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAK---------------ESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL----QPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQI 512
            + + + V LP    EL+    L  P KGVLLYGPPG GKT++AKA+A                E+ + F+N++   L++K+ G+ ++ +  +F  A +      P I+F DE+DS    R T    +  T +  + ++  DG    +N  V+V+ A+NR   +D AILR  RL    +I  PD +    I
Sbjct:  262 EQIRDAVELPFLHKELYREYSLR-PPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLEN--VIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDI 448          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
NSF_RAT1.559e-1633.68Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_PONAB1.559e-1633.68Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
NSF_MOUSE1.559e-1633.68Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN1.559e-1633.68Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR1.559e-1633.68Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
MPA_RHOER1.559e-1631.79Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
SEC18_YEAST4.535e-1631.75Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
NSF1_DROME4.535e-1631.10Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
MPA_MYCLE4.535e-1632.11Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
MPA_MYCTU7.735e-1632.11Proteasome-associated ATPase OS=Mycobacterium tube... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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