BQ623367

Overview
NameBQ623367
Unique NameBQ623367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623367 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 44/150 (29.33%), Postives = 70/150 (46.67%), Query Frame = 3
Query:   18 PNYQCGPPVRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKG-RSPKCCVSFSAYYNDSVVPCKTCACGCKSTSQTCSTTXXXXXXXXXXXXXXFENRSSLARAWADLKHRTVPNPMPCADN-CGVSINWHLHTDYNRGWTARVTIFNW 461
            P Y CG  + V P+ F    G  A + A  +W V C  ++    ++P CCVS S++YND++V C TC+CGC++   +  +                EN   L  A       T    + C  + C + I+WH+  +Y   W  ++TI N+
Sbjct:  186 PGYTCGRAMIVRPTKFFTGDGRRATQ-ALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVN-------------ENSPYLQSAIDGPGKWTGQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNF 321          
BLAST of BQ623367 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/159 (28.93%), Postives = 69/159 (43.40%), Query Frame = 3
Query:   18 PNYQCGPPVRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGRS-PKCCVSFSAYYNDSVVPCKTCACGCKSTSQTCSTTXXXXXXXXXXXXXXFENRSSLARAWADLKHRTVPNPMPCADN----------CGVSINWHLHTDYNRGWTARVTIFNW 461
            P Y CGP  ++ PS     +       A  +W V C  ++   R  P CCVSFS++YND++ PC +CACGC                         EN+ S  +A + +  +   N  P  DN          C V ++WH+ T+Y   W  ++ I N+
Sbjct:  170 PGYTCGP-AKIVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGC-------------------------ENKKSCVKADSKILTKKGLNT-PKKDNTPLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNF 301          
The following BLAST results are available for this feature:
BLAST of BQ623367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
COBL3_ORYSJ2.395e-1329.33COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH3.127e-1328.93COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00458 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00458 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623367 ID=BQ623367; Name=BQ623367; organism=Citrus sinensis; type=EST; length=704bp
TCAACGGGACACTCAACCCTAATTATCAATGTGGCCCTCCAGTGAGGGTG
AGTCCCAGCCATTTCCCGGACCCCAGTGGTGGTCCAGCAAATAGAACTGC
TTTTGCTAGCTGGCAAGTTGTGTGCAATATTACACGGCCCAAGGGAAGGA
GCCCTAAATGCTGTGTATCATTTTCTGCCTATTACAATGACTCCGTTGTC
CCCTGCAAAACTTGTGCATGTGGGTGCAAGAGTACAAGCCAAACTTGTAG
TACTACTGCTCCTGCTATTCTTCTTCCGCCTGAAGCTCTTCTTCTTCCCT
TTGAGAATCGTTCTTCTCTGGCAAGAGCTTGGGCGGATCTTAAACATCGA
ACAGTGCCAAACCCAATGCCCTGTGCAGATAATTGTGGTGTCAGTATCAA
CTGGCATTTACATACAGACTATAATCGTGGATGGACTGCAAGAGTGACAA
TCTTCAACTGGGGTGAAACTGCTTTTCCTGATTGGTTTGCTGCGATGCAG
TTCGACAAAGCAGCTCCGGGTTTTGAAGCAGCATACTCATTCAATGGAAC
TGTTTTGGATGGCGGCAATGATACTATATTCATGCAGGGTCTTCCGGGAT
TGAACTTTCTTGTGGGTGAGACAGATGGAGCCCATCCTGAGGAGGATCCT
AGAGTGCCTGGGAAACAACAGTCAGTGATCTCGTTTAAAAGACAGATACC
CCTG
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