BQ623372

Overview
NameBQ623372
Unique NameBQ623372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig567 contig Csv1_Contig567:85..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623372 vs. ExPASy Swiss-Prot
Match: CYTM_SOLTU (Multicystatin OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   51 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF 308
            LGG+ NV    NN E  +LARFAV ++NKK+N++L+F            G LY ITL A++ G+KK++EAK+W K W  FK++ EF
Sbjct:  476 LGGIINVPFP-NNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAIDAGKKKIYEAKIWVKEWENFKKVIEF 560          

HSP 2 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   51 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA*LV 350
            LGG+ +V    NN E  +LARFA+  +NKK+N +L+F            G +Y ITL A++ G+KK++E K+W K W  FK++ EF  V    + T  ++
Sbjct:  193 LGGITDVPFP-NNPEFQDLARFAIQVYNKKENVHLEFVENLNVKQQVVAGMMYYITLAAIDAGKKKIYETKIWVKEWEDFKKVVEFKLVGDDSAKTGGII 291          

HSP 3 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   51 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA*LVV 353
            +GG  +V    NN E  +LARFAV ++NKK+N++L++            G +Y ITL A + G+KK++EAK+W K W  FK++ EF  V    +    +++
Sbjct:  570 IGGFTDVPFP-NNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVATDAGKKKIYEAKIWVKEWEDFKKVVEFKLVGDDSAKPGGIII 669          

HSP 4 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 3
Query:   54 GGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV-EGGQKKLFEAKVWEKPWMQFKELKEFNPV 317
            GG+ NV    NN +   LARFA+ ++NKKQN++L+F            G +Y ITL A  + G+KK+++AK+W K W  FK++ EF  V
Sbjct:   99 GGIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKKVVEFKLV 186          

HSP 5 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 3
Query:   51 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 317
            LGG   V    N+ E  +L RFAV ++NK QN++L+F            G LY IT  A +GG+KK++E K+W K W  FK++ EF  V
Sbjct:  382 LGGFTEVPFP-NSPEFQDLTRFAVHQYNKDQNAHLEFVENLNVKKQVVAGMLYYITFAATDGGKKKIYETKIWVKVWENFKKVVEFKLV 469          

HSP 6 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 3
Query:   54 GGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 317
            GG+ NV    N+ E  +LARFAV ++N  QN++L+F            G +Y ITL A + G KK +EAK+W K W  FK++ +F  V
Sbjct:  288 GGIINVP-NPNSPEFQDLARFAVQDYNNTQNAHLEFVENLNVKEQLVSGMMYYITLAATDAGNKKEYEAKIWVKEWEDFKKVIDFKLV 374          
BLAST of BQ623372 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 3
Query:    3 LLIALSSDLRRKQWPTLGG-----VRNVEATANNQ--EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 341
            LL+A+++   R     LGG     VR + A    +  E  + ARFAV E+NK Q + L+F            GTL+D+ LE V+ G+K L+ AKVW KPW+ FK + EF  V  S S +A
Sbjct:   22 LLLAVAAAAPRAAGFHLGGDESVLVRGMLAAIRREQAEAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSA 141          
BLAST of BQ623372 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   12 ALSSDLRRKQWPTLGGVRNVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNPV 317
            A++ + ++ +   +GG+ +  A   N    V LARFAV EHN K N+ L+             G ++ +T+E  E GG  KL+EAKVWE+ W  FK+L++F P+
Sbjct:   43 AMAEEAQQPRGVKVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPL 146          
The following BLAST results are available for this feature:
BLAST of BQ623372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTM_SOLTU6.427e-1546.51Multicystatin OS=Solanum tuberosum PE=2 SV=1[more]
CYT3_ORYSJ1.870e-1439.17Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYT2_ORYSJ2.286e-1236.54Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00463 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00463 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623372 ID=BQ623372; Name=BQ623372; organism=Citrus sinensis; type=EST; length=569bp
ATCTTCTCATCGCTTTATCATCAGACTTACGCAGAAAACAATGGCCTACA
TTGGGCGGTGTTCGTAACGTTGAAGCAACAGCCAACAATCAGGAGATCGT
TAATCTCGCACGCTTCGCTGTGGATGAGCATAACAAGAAGCAGAATTCAA
ATCTGCAATTTGTAAAAGTTGTAAGTGCGAAGCAGCAAGTGGTTTCAGGG
ACTCTGTACGACATCACCTTGGAGGCTGTTGAAGGAGGTCAGAAGAAACT
TTTTGAAGCTAAGGTCTGGGAGAAGCCTTGGATGCAATTCAAGGAGTTGA
AAGAATTCAATCCTGTTGCTCAGTCTCACTCCTCAACCGCTTAGCTTGTG
GTGACTGAAGATGACATCTGTAGCTTGCAATGGATCAAACAAAGAGACAG
TATCAATAAGAATGGAGCTATAACCATGTTCAGATTATAAAAATAAATGT
AACCGGACTTATGAGTTTGGTTCTTTAATCTTTTGCAAGTTATGTGTCGA
TTATTTATGGTAGTAGCTGCAACTCAGCGCAACTTTTATAACTGTGTGAA
AAATAATTGAAATGACCTT
back to top