BQ623375

Overview
NameBQ623375
Unique NameBQ623375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:37..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.921e-36
Identity = 80/138 (57.97%), Postives = 100/138 (72.46%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+K VKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.688e-36
Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G+ A RKL+  R + RW+ + +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL KNGK + AFVP DG +NYI+E+DEV+I G  G +G ++GDIPGVR+K + V+GVSL AL+  KK+KP
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+K VKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G+ A +KLK +R+  RW D  YK+  LG   K  P  GS  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+K  KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVALSEMVSGKIEKP 139          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G  A RKLK  R+++RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +K  KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G  A RKLK  R+++RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +K  KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 76/137 (55.47%), Postives = 99/137 (72.26%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G+ A +KLKS R++ +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G  G  G ++GDIPGVR+K  KV+ VSL  + K K EKP
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G  A RKLK  R++ RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +K  KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G  A RKLK  R++ RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +K  KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.662e-35
Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            RGM A RKL+  R++ RW+D  YK+  L  + K  P  G+  A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK + AF+P DG L ++ E+DEV+I G  G +G A GD+PGVR+K +KV+GVSL  + + +K+KP
Sbjct:    8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILRGRKQKP 145          
The following BLAST results are available for this feature:
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PYRKO3.921e-3657.9730S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_STAMF6.688e-3655.4730S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_PYRHO1.141e-3557.2530S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_METST1.141e-3556.2030S ribosomal protein S12P OS=Methanosphaera stadt... [more]
RS12_HALWD1.946e-3555.4730S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALSA1.946e-3555.4730S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_METTH2.542e-3555.4730S ribosomal protein S12P OS=Methanobacterium the... [more]
RS12_HALMA2.542e-3555.4730S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS12_NATPD3.319e-3555.4730S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_THEPD5.662e-3552.9030S ribosomal protein S12P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00466 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00466 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623375 ID=BQ623375; Name=BQ623375; organism=Citrus sinensis; type=EST; length=573bp
TTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAATCCTCTTC
GTAACGCCAACATGGGGAAGACATCGTGGAATGGGAGCGGGTCGCAAGCT
GAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAAT
CCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCA
AAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTC
CGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGA
TTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTGAAGAAAAT
GACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGA
TATTCCTGGTGTTAGATTTAAGGGTGTCAAGGTTTCAGGCGTGTCTCTTC
TGGCCCTCTTCAAGGAGAAGAAGGAGAAACCCAGATCCTAAACTCCTGAT
TCAAGATACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAAT
CCCCGTTGATTACTGGTTTCCTT
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