BQ623375

Overview
NameBQ623375
Unique NameBQ623375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:37..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.068e-33
Identity = 75/138 (54.35%), Postives = 92/138 (66.67%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            G  A RKLK      RW D  Y +  LG + K  P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G + GDIPGVRF   KV+ VSL  +   +KEKPR
Sbjct:    4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.068e-33
Identity = 72/138 (52.17%), Postives = 102/138 (73.91%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            G+ A RKL+  R + RW+ + ++   L  + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL+KN K + AFVP DG + Y++E+DEV+I G  G +G ++GDIPGVR++ V V+GVSL AL++ KK+KPR
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.821e-33
Identity = 72/138 (52.17%), Postives = 102/138 (73.91%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            +G+ A RKL+  R + R + + YK   L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RKC RVQL++NG+ + AFVP DG +N+I+E+DEV+I G  G  G ++GD+PGVR+K + V+GVSL AL+K KK+KP
Sbjct:    8 KGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.821e-33
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            G  A  +L+  R+  RW D  Y +  LG + K  P +G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFK + V+ VSL  +   +KEKPR
Sbjct:    4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.107e-33
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G  A RKLK  R+  RW+D  Y +   G  E      G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNG+++ AF P DG +++I+E+DEV IAG  G KG A+GD+  V +K  KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.040e-33
Identity = 75/139 (53.96%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            +G  A RKLK    R RW+D  + ++  G + K  P  G+   +GIVLEKIG+EAKQPNSAIRKC RVQLIKNG++++AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF   KV+ V L  L   +KEKPR
Sbjct:    3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.181e-32
Identity = 72/139 (51.80%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            +G  A RKL    ++ RW+DK+Y +  L  + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVR+    V+ V L  +   +KEKPR
Sbjct:    3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.181e-32
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFK + V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.014e-32
Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFK + V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.014e-32
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 3
Query:   75 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            +G  A   LK  R+  RW D SY +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRF+   V+ VSL  +   + EKPR
Sbjct:    3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141          
The following BLAST results are available for this feature:
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METMJ1.068e-3354.3530S ribosomal protein S12P OS=Methanoculleus maris... [more]
RS12_AERPE1.068e-3352.1730S ribosomal protein S12P OS=Aeropyrum pernix GN=... [more]
RS12_SULSO1.821e-3352.1730S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_METBU1.821e-3352.1730S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_HALMO3.107e-3353.2830S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METHJ9.040e-3353.9630S ribosomal protein S12P OS=Methanospirillum hun... [more]
RS12_METB61.181e-3251.8030S ribosomal protein S12P OS=Methanoregula boonei... [more]
RS12_METAC1.181e-3253.2430S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS12_METMA2.014e-3252.5230S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METBF2.014e-3251.8030S ribosomal protein S12P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00466 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00466 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623375 ID=BQ623375; Name=BQ623375; organism=Citrus sinensis; type=EST; length=573bp
TTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAATCCTCTTC
GTAACGCCAACATGGGGAAGACATCGTGGAATGGGAGCGGGTCGCAAGCT
GAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAAT
CCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCA
AAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTC
CGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGA
TTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTGAAGAAAAT
GACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGA
TATTCCTGGTGTTAGATTTAAGGGTGTCAAGGTTTCAGGCGTGTCTCTTC
TGGCCCTCTTCAAGGAGAAGAAGGAGAAACCCAGATCCTAAACTCCTGAT
TCAAGATACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAAT
CCCCGTTGATTACTGGTTTCCTT
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