BQ623381

Overview
NameBQ623381
Unique NameBQ623381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:135..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 2 
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQ 490
            G T V +   D  V A + R + G  I S+   KI ++AD+  M ++G   D + L +++     +Y+ +  ++ +  A+  L SN L   R+FPY    ++GG+D+EGK  +Y+ D + G+ E     + GSGS      L+++
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDR 154
The following BLAST results are available for this feature:
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSMB_ARCFU1.260e-1129.66Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00472 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00472 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623381 ID=BQ623381; Name=BQ623381; organism=Citrus sinensis; type=EST; length=689bp
TTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCATACG
ACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTGTGTA
ACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCCGCGA
TTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTG
GTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAGGCAT
TTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAATGGG
CCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTACTATT
CATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGTCTAC
ACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAGGG
TTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAGTCTC
CCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAG
GCTGAAGCAGTTGATTTGGTCAAACTTGGTTTGCATCAGCAACTGAGAGG
GACATATACACGGGAAACAAACTTGAAATTGGTGTCCTAACAAAGATGGG
ATTTATCGTGAATACATGGAACTGAGGAAGGATTAATCT
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