BQ623389

Overview
NameBQ623389
Unique NameBQ623389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.400e-55
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  130 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 265
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.829e-55
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.829e-55
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.829e-55
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  130 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPG 265
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.388e-55
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 415
            VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D +YPGG  FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YA    PG+
Sbjct:  132 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPGT 268
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.388e-55
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE  D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct:  142 VWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 277
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 4.074e-55
Identity = 109/138 (78.99%), Postives = 118/138 (85.51%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFK G+QIFS+GGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  131 VWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.320e-55
Identity = 107/138 (77.54%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG +EG+R+ G P +GE  D LYPGG  FDPLGLADDP  FA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGP-LGEVVDPLYPGGT-FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.320e-55
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.320e-55
Identity = 105/138 (76.09%), Postives = 117/138 (84.78%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW +AT FVPG
Sbjct:  130 VWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPG 266
The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB21_TOBAC1.400e-5580.43Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2B_SOLLC1.829e-5580.43Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL1.829e-5580.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_NICPL1.829e-5579.71Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2_PHYPA2.388e-5579.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY2.388e-5577.54Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB23_NICPL4.074e-5578.99Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB29_MAIZE5.320e-5577.54Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC5.320e-5579.71Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_ARATH5.320e-5576.09Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bp
GGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACT
ACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTG
GGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGG
CCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCCAATATT
TTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAACTCAAG
GTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTTGGTTT
CTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCTTGGAGAACCTCCTGG
ACCACCTTGAGAACCCTGTTGCCAACAATGCTTGGGTCTATGCTACCAAG
TTTGTACCTGGATCATAAACTGATTATGATTA
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