BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:820..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 356
            G C++D    AA  S +  +    E+ +   +   GP++VGI+A     ++   GV     C + ++HGVL+VGYG+          K YW++KNSWG ++G+ GY ++     N CG+
Sbjct:  211 GKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGN-------LDGKDYWLVKNSWGLHFGDQGYIRMARNSGNHCGI 322          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVS--NFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 329
            D  +CK  + K    V+     V+  +++      V + P++V I+A  M  Y  GV        + DH VLIVGYG+S        E  YW+I+NSWG  WGE GY ++
Sbjct:  222 DTAACKAIEMKTTRVVTINGHEVVPVNDEMSLKKAVAYQPISVMISAANMSDYKSGVYKGACSNLWGDHNVLIVGYGTSS------DEGDYWLIRNSWGPEWGEGGYLRL 325          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            SC ++ +  AA    +  I   +E  +   + + GP++V I+A     Q Y  GV     C +  ++H VL+VGYG+        K   +WIIKNSWGE+WG  GY  +   + N CG+ +M S
Sbjct:  209 SCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQ-------KGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMAS 325          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CATS_BOVIN5.000e-1131.93Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CPR2_ARATH6.530e-1134.55Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATK_MOUSE6.530e-1133.87Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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