BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   78 DEDQMAANLVKHGPLAVG--INAVWMQTYIG-----GVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            +E  M   LVKHGP+AV   ++  ++  + G     G+S P+   +  +H VL+VGYG      +      YWI+KNSWG  WGE+GY++I  G + C ++S+  +   I
Sbjct:  355 NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGL-----DYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPI 459          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            C++D    AA  S ++ +    ED +   +   GP+ VG++A     ++   GV     C + ++HGVL++GYG           K YW++KNSWG N+GE GY ++   + N CG+ S  S
Sbjct:  212 CQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGD-------LNGKEYWLVKNSWGSNFGEQGYIRMARNKGNHCGIASYPS 326          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            G C +     A  V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG   D   H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+C + +  S
Sbjct:  239 GVCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVR--PVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCAIATCAS 356          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 39/129 (30.23%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            D  +C+ + +K    V + +  I+  E+++   L   GP+ + I+A  +  Y  G+   Y     L+H VL+VGYG            PYW  KN+WG +WGE G++++    N CG+ + ++S A I+
Sbjct:  203 DNNNCRMNTNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVNYKQGI-IKYCFNSGLNHAVLLVGYGVEN-------NIPYWTFKNTWGTDWGEEGFFRVQQNINACGMRNELASTAVIY 323          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 41/129 (31.78%), Postives = 65/129 (50.39%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            + G C+ + +K    V   +  +   E+++   L   GPL V I+A  +  Y  GV   Y     L+H VL+VGY      P       +WI+KN+WG +WGE GY+++    N CG+ + + S A I+
Sbjct:  204 NNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRGV-IRYCANHGLNHAVLLVGYAVENGVP-------FWILKNTWGTDWGEQGYFRVQQNINACGIQNELPSSAEIY 324          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = 3
Query:   12 GSCKFDKSKI-AAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV----CGVDSMVS 371
            G C  ++      ++  F  +  ++++     V H P++V I A     Q Y  GV     CG  LDHGV+ VGYG+          K YWI++NSWG  WGE+GY ++    NV    CG+  M S
Sbjct:  236 GKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGR-CGTSLDHGVVAVGYGTDN-------GKDYWIVRNSWGPKWGESGYVRMERNINVTTGKCGIAMMAS 354          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 39/129 (30.23%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            D  +C+ + +K    V + +  I   E+++   L   GP+ + I+A  +  Y  G+   Y     L+H VL+VGYG            PYW  KN+WG +WGE+G++++    N CG+ + ++S A I+
Sbjct:  203 DNNNCRMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDAADIVNYKQGI-IKYCFDSGLNHAVLLVGYGVEN-------NIPYWTFKNTWGTDWGEDGFFRVQQNINACGMRNELASTAVIY 323          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 44/124 (35.48%), Postives = 59/124 (47.58%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            SC+F+  K  A V N  ++  +DE  M   +  + P++           Y  GV     C K  D   H VL VGYG             YWI+KNSWG  WGENGY+ I  G+N+CG+ +  S
Sbjct:  211 SCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLL-------YWIVKNSWGSQWGENGYFLIERGKNMCGLAACAS 327          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 3
Query:    9 GGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGV 356
            G  C++     AA V +F  I   E+ +   + K GP++V ++A     Q Y  G+     C + +L+H VL+VGYG  G          +W++KNSWGE WG  GY K+     N CG+
Sbjct:  208 GRECRYHAENSAANVRDFVQIPGSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEGEES---DGNSFWLVKNSWGEEWGMKGYMKLAKDWSNHCGI 324          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 47/129 (36.43%), Postives = 63/129 (48.84%), Query Frame = 3
Query:   12 GSCKFDK-SKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVS 371
            G C   K S+   ++  F  +  +++      V H P++V I+A     Q Y  GV     CG  LDHGV+ VGYG+            YW ++NSWG +WGENGY  I M RNV      CG+  M S
Sbjct:  251 GKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGR-CGTNLDHGVVAVGYGTDAATGAA-----YWTVRNSWGPDWGENGY--IRMERNVTARTGKCGIAMMAS 371          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CATC_RAT9.112e-1335.45Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATS_SAIBB1.190e-1232.79Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
ALEU_HORVU1.190e-1235.43Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATV_NPVRO1.554e-1230.23Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATV_NPVCD1.554e-1231.78Viral cathepsin OS=Choristoneura fumiferana defect... [more]
ORYB_ORYSJ2.030e-1233.86Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CATV_NPVBM2.030e-1230.23Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATH_MOUSE2.030e-1235.48Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
TEST2_RAT3.462e-1234.17Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CYSP1_ORYSJ3.462e-1236.43Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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