BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:820..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 356
            +C+F+ + I A  + +  I+   +       +  GP++V I+A     Q+Y  GV     C    LDH VL VGYGS G        + +W++KNSW  +WGE+GY K+   R N CG+
Sbjct:  202 TCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGESGYIKMARNRNNNCGI 313          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQT--YIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM-GRNVCGVDSMVS 371
            C ++    AA  S +  +   DED +   +   GP++VGI+A       Y  GV     C   ++HGVL+VGYG+          K YW++KNSWG N+G+ GY ++    +N CG+ S  S
Sbjct:  222 CHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGT-------LDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCS 336          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 46/123 (37.40%), Postives = 61/123 (49.59%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  211 SCTYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAAS 330          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 42/138 (30.43%), Postives = 63/138 (45.65%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPI------------RFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            + G C++      A +S++  +++  +    + V   P++V I+A     Q Y  G+   P    + LDHGVL VGYGS   +                    YWI+KNSWG +WG  GY  +   R N CG+ S  S
Sbjct:  203 ENGKCEYKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRNRDNNCGIASSAS 340          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 44/123 (35.77%), Postives = 59/123 (47.97%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G          +WI+KNSWG  WG  GY K+   + N CG+ +  S
Sbjct:   97 SCNYKPEYSAAKDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG------TNNKFWIVKNSWGPEWGNKGYVKMAKDQNNHCGIATAAS 213          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 40/135 (29.63%), Postives = 64/135 (47.41%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSNFSVI-----SSDEDQMAANLVKHGPLAVGINA----------VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSM 365
            D G C   K+      +++S I     +++E  M   L+ +GP  VG             ++  T +      +   +  +H VL+VGYG       +   +PYW +KNSWG  WGE GY++I  G + CGV+S+
Sbjct:  317 DTGKCTVSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVD-----KLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGVESL 446          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3
Query:   78 DEDQMAANLVKHGPLAVGINA----------VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            +E  M   LV HGP+AV              ++  T   G+  P+   +  +H VL+VGYG+   + +      YWI+KNSWG  WGENGY++I  G + C ++S+  +   I
Sbjct:  356 NEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT---GLRDPFNPFELTNHAVLLVGYGTDSASGM-----DYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPI 460          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   78 DEDQMAANLVKHGPLAVGINA----------VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            +E  M   LV+HGP+AV              ++  T   G+  P+   +  +H VL+VGYG+   + +      YWI+KNSWG  WGE+GY++I  G + C ++S+  +   I
Sbjct:  328 NEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHT---GLRDPFNPFELTNHAVLLVGYGTDSASGM-----DYWIVKNSWGSRWGEDGYFRIRRGTDECAIESIAVAATPI 432          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGV 356
            DG   +  K+     + ++  + +  ++     V H P+++ I A     Q Y  G+     CG  LDHGV+ VGYG+          K YWI++NSWG++WGE+GY +  M RN+      CG+
Sbjct:  230 DGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIF-DGSCGTQLDHGVVAVGYGTEN-------GKDYWIVRNSWGKSWGESGYLR--MARNIASSSGKCGI 344          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   27 DKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYIC-GKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            DKS+    ++ +  +++ E  +   +   GP++  +    M++Y GG+     C G  L HGV +VGYG           + YWIIKN+WG +WGE+GY ++     + CGV+ M S
Sbjct:  210 DKSRSVVELTGYKKVTASETSLKEAVGTIGPISAVVFGKPMKSYGGGIFDDSSCLGDNLHHGVNVVGYGIEN-------GQKYWIIKNTWGADWGESGYIRLIRDTDHSCGVEKMAS 319          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CYSP1_HOMAM7.713e-1234.45Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATS_MOUSE7.713e-1234.43Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATL1_PIG7.713e-1237.40Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CYSP5_DICDI1.007e-1130.43Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATL1_SHEEP1.007e-1135.77Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATC_SCHMA1.007e-1129.63Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
CATC_HUMAN1.007e-1133.63Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
CATC_CANFA1.007e-1132.74Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
RD21A_ARATH1.316e-1132.00Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CATLL_PHACE1.316e-1132.48Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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