BQ623397

Overview
NameBQ623397
Unique NameBQ623397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.313e-41
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1
Query:   34 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKD+ WDDHW+FWVGPFIGAALAALYH +VIRAIPFKS
Sbjct:  202 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.836e-40
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 1
Query:   31 AARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            +ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+YN+ H W+DHWIFWVGPFIGAALAA+YH V+IRA+PFKS
Sbjct:  203 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKS 286          

HSP 2 Score: 22.7126 bits (47), Expect = 2.836e-40
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:    3 VFSATDAKRS 32
            VFSATDAKRS
Sbjct:  194 VFSATDAKRS 203          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 7.038e-40
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1
Query:   34 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+YN+ H W DHWIFWVGPFIGAALAA+YH VVIRAIPFKS
Sbjct:  204 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKS 286          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.562e-39
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1
Query:   34 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS 285
            ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN +H W+DHWIFWVGP IGAALAA+YHQ++IRA+PF  S
Sbjct:  203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRAMPFHRS 286          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.562e-39
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 1
Query:   34 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            ARDSHVPILAPLPIGFAVFLVHLAT+ ITGTGINPARSLGAA+IYN+ H W DHWIFWVGPFIGAALAA+YHQV+IRAIPFKS
Sbjct:  203 ARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 285          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.958e-39
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 1
Query:   34 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS 285
            ARDSHVP LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY+  HGW  HWIFWVGPF GAALAA+YHQVV+RAIPFKSS
Sbjct:  210 ARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKSS 293          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.242e-36
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRA 267
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN D  WDDHWIFWVGPFIGAA+AA YHQ V+RA
Sbjct:  191 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRA 272          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.242e-36
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P  +ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK   WDDHWIFWVGPFIGAA+AA YHQ V+RA   KS
Sbjct:  191 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKS 277          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.622e-36
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P  +ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAAIIYNKD  WD HWIFWVGPF GAA+AA YHQ V+RA   K+
Sbjct:  190 PKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKA 276          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK   WDDHWIFWVGPFIGAA+AA YHQ V+RA   KS
Sbjct:  189 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKS 275          
The following BLAST results are available for this feature:
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PIP12_ARATH8.313e-4192.77Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP15_MAIZE2.836e-4088.10Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ7.038e-4091.57Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP1_SOLLC4.562e-3986.90Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP11_MAIZE4.562e-3989.16Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE5.958e-3989.29Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP25_MAIZE1.242e-3684.15Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP21_ARATH1.242e-3680.46Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP25_ARATH1.622e-3680.46Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH2.767e-3680.46Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00488 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00488 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623397 ID=BQ623397; Name=BQ623397; organism=Citrus sinensis; type=EST; length=492bp
GGGTTTTCTCTGCCACTGACGCCAAACGTAGCCGCCAGAGACTCTCATGT
TCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACT
TGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAGTCTT
GGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATTGGAT
TTTCTGGGTGGGACCATTCATTGGAGCAGCACTTGCAGCTTTGTACCACC
AGGTTGTGATCAGAGCCATTCCGTTCAAATCAAGCTGATGGTCTTATGAA
CGGTCGTGATTGCTGATGCATTTGTTTATGGCTGTCGTTGGTGGTTCTGT
TTTATATTTTAGATTATCCCAAGTCCATGCATTTTCGGTTCGTTAAATTT
TCTGGTTGTTTGGTTTTGTGTATGAATTTTCTGTAATGCCTATGCACAAA
GAAGCCGCTGGCAGTGGCTTTATTTAAATTTATGTAGTTTAT
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