BQ623397

Overview
NameBQ623397
Unique NameBQ623397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.817e-35
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRA 267
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLG A++YN +  W D WIFWVGPFIGAA+AALYHQV++RA
Sbjct:  193 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRA 274          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS+GAA+IYN+   WDDHWIFW GPFIGA  AA YHQ ++RA   K+
Sbjct:  186 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKA 272          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.983e-34
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRA 267
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+   W DHWIFWVGP IGAA+AA YHQ V+RA
Sbjct:  196 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRA 277          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.383e-34
Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSH+P+LAPLPIGF+VF+VHLATIPITGTGINPARS GAA+IYN    WDD WIFWVGPF+GAA+AA YHQ V+RA   K+
Sbjct:  190 PKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKA 276          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.383e-34
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN +  WDD WIFWVGP IGAA AA YHQ ++RA   K+
Sbjct:  191 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKA 277          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.418e-34
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P  +ARDSH+P+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN +  WDD WIFWVGPF+GA  AA YHQ ++RA   K+
Sbjct:  184 PKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKA 270          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.418e-34
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS+GAA+I+N +  W +HWIFWVGPF+GAA+AA YHQ ++RA   K+
Sbjct:  196 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKA 282          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.286e-33
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARS G A+I+N D  WDD WI+WVGPF+GAA+AA+YHQ ++R    K+
Sbjct:  193 PKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKA 279          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIR 264
            P   ARDS +P+L PLPIGFAVF+VHLATIPITGTGINPARSLGAA++YN+   W DHWIFWVGP IGA LAA YH++V+R
Sbjct:  193 PKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLR 273          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   22 PNVAARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII--YNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 282
            P   ARDSHVP+LAPLPIG AV +VHLATIPITGTGINPARSLG A++        W   WIFWVGPF GAA A +YH  ++R    K+
Sbjct:  181 PKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKA 269          
The following BLAST results are available for this feature:
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PIP24_ORYSJ6.817e-3579.27Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP26_ORYSJ1.163e-3474.71Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP23_ORYSJ1.983e-3480.49Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP26_ARATH3.383e-3473.56Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH3.383e-3474.71Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH4.418e-3472.41Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP21_ORYSJ4.418e-3472.41Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP27_MAIZE1.286e-3370.11Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP27_ORYSJ2.681e-3174.07Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP28_ORYSJ1.683e-2561.80Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00488 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00488 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623397 ID=BQ623397; Name=BQ623397; organism=Citrus sinensis; type=EST; length=492bp
GGGTTTTCTCTGCCACTGACGCCAAACGTAGCCGCCAGAGACTCTCATGT
TCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACT
TGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAGTCTT
GGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATTGGAT
TTTCTGGGTGGGACCATTCATTGGAGCAGCACTTGCAGCTTTGTACCACC
AGGTTGTGATCAGAGCCATTCCGTTCAAATCAAGCTGATGGTCTTATGAA
CGGTCGTGATTGCTGATGCATTTGTTTATGGCTGTCGTTGGTGGTTCTGT
TTTATATTTTAGATTATCCCAAGTCCATGCATTTTCGGTTCGTTAAATTT
TCTGGTTGTTTGGTTTTGTGTATGAATTTTCTGTAATGCCTATGCACAAA
GAAGCCGCTGGCAGTGGCTTTATTTAAATTTATGTAGTTTAT
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