BQ623397

Overview
NameBQ623397
Unique NameBQ623397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   61 APLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRA 267
            AP+ +G A+   HLA I  TG+ +NPARS G A+  N D  W +HW++W GP +G  +A + ++ + RA
Sbjct:  177 APVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVGGVVAGITYRALFRA 243          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 279
            L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP IGA LA  LY  V    + FK
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYVFCPDVEFK 259          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            L IGF+V L HL  I  TG  +NPARSL  AI+  K   +DDHW+FW+GP +GA +A+L +  V+
Sbjct:  162 LSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            L IGF+V L HL  I  TG  +NPARSL  AI+  K   +DDHW+FW+GP +GA +A+L +  V+
Sbjct:  162 LSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   28 VAARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DDHWIFWVGPFIGAALAALYHQVV 258
            + A D   P   AP+PIG A+ L+HL +IP+T T +NPARS G A+      GW  +  W+FW+ P  GA + AL +++V
Sbjct:  153 LGATDKRAPAGFAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   28 VAARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DDHWIFWVGPFIGAALAALYHQVV 258
            + A D   P   AP+PIG A+ L+HL +IP+T T +NPARS G A+      GW  +  W+FW+ P  GA + AL +++V
Sbjct:  153 LGATDKRAPAGFAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 279
            L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP IGA LA ALY  V    +  K
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 259          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 279
            L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP IGA LA ALY  V    +  K
Sbjct:  194 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 262          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   55 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            I+APL IG  V    L   P +G  +NPAR+ G A++  +   W DHWI+WVGPFIG+ALAAL ++ ++
Sbjct:  181 IIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW+GP +GA L +L +  V+
Sbjct:  162 LSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAILGSLLYNYVL 223          
The following BLAST results are available for this feature:
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
AQP_CICVR2.134e-1242.03Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP4_HUMAN6.208e-1250.00Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP2_SHEEP8.108e-1250.77Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP2_BOVIN8.108e-1250.77Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQPZ_BORPA1.059e-1142.50Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR1.059e-1142.50Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQP4_RAT1.059e-1150.00Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL1.059e-1150.00Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP31_ARATH1.383e-1147.83Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQP2_HUMAN1.383e-1149.23Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00488 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00488 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623397 ID=BQ623397; Name=BQ623397; organism=Citrus sinensis; type=EST; length=492bp
GGGTTTTCTCTGCCACTGACGCCAAACGTAGCCGCCAGAGACTCTCATGT
TCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACT
TGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAGTCTT
GGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATTGGAT
TTTCTGGGTGGGACCATTCATTGGAGCAGCACTTGCAGCTTTGTACCACC
AGGTTGTGATCAGAGCCATTCCGTTCAAATCAAGCTGATGGTCTTATGAA
CGGTCGTGATTGCTGATGCATTTGTTTATGGCTGTCGTTGGTGGTTCTGT
TTTATATTTTAGATTATCCCAAGTCCATGCATTTTCGGTTCGTTAAATTT
TCTGGTTGTTTGGTTTTGTGTATGAATTTTCTGTAATGCCTATGCACAAA
GAAGCCGCTGGCAGTGGCTTTATTTAAATTTATGTAGTTTAT
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