BQ623397

Overview
NameBQ623397
Unique NameBQ623397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   64 PLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            PL IG +V L HL  I  TG G+NPARS G+A++      +  HWIFWVGP IG A AA+ +  ++
Sbjct:  173 PLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW+GP +GA + +L +  ++
Sbjct:  162 LSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLL 223          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   67 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 279
            L IGF+V + HL  I  TG  +NPARS G A+I      W +HWI+WVGP +GA LA ALY  V    +  K
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYVFCPDVELK 259          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   46 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 261
            HV  +APL +GF +    LA  P  G G+NPAR  G A++  +   W  HW++W+GPF+GA LA L ++ ++
Sbjct:  174 HVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLV 242          
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   55 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVV 258
            ++AP+ IGF V    LA     G  +NPA S G A++      WD+HW++W+GPF+GAA+AAL + ++
Sbjct:  173 VIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGV---WDNHWVYWLGPFVGAAIAALIYDII 237          
The following BLAST results are available for this feature:
BLAST of BQ623397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
AQPA_RANES5.256e-1148.48Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP2_RAT5.256e-1146.15Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQP4_MOUSE6.864e-1148.61Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
TIP31_MAIZE8.965e-1141.67Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP12_ORYSJ8.965e-1142.65Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00488 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00488 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623397 ID=BQ623397; Name=BQ623397; organism=Citrus sinensis; type=EST; length=492bp
GGGTTTTCTCTGCCACTGACGCCAAACGTAGCCGCCAGAGACTCTCATGT
TCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACT
TGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAGTCTT
GGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATTGGAT
TTTCTGGGTGGGACCATTCATTGGAGCAGCACTTGCAGCTTTGTACCACC
AGGTTGTGATCAGAGCCATTCCGTTCAAATCAAGCTGATGGTCTTATGAA
CGGTCGTGATTGCTGATGCATTTGTTTATGGCTGTCGTTGGTGGTTCTGT
TTTATATTTTAGATTATCCCAAGTCCATGCATTTTCGGTTCGTTAAATTT
TCTGGTTGTTTGGTTTTGTGTATGAATTTTCTGTAATGCCTATGCACAAA
GAAGCCGCTGGCAGTGGCTTTATTTAAATTTATGTAGTTTAT
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