BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 102/135 (75.56%), Postives = 122/135 (90.37%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN++SGMAV D+CKLKF+ELKAKR +RFIVFKIEEK +QV VE+LG+P ++Y+DF   LP  ECRYAV+D+DFVT ENCQKS+IFFI+WSPDT+RVRSKM+YAS+KDRFKRELDGIQVELQATDPSEM +D+ K
Sbjct:    1 MANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 101/135 (74.81%), Postives = 124/135 (91.85%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN+ASGMAV D+CKLKF ELK+KR++RFI FKI+E+ +QV+V++LG+P  TY+DF AS+PA ECRYAV+D+DFVT ENCQKS+IFFI+WSPDT++VRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K
Sbjct:    1 MANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.872e-57
Identity = 104/135 (77.04%), Postives = 121/135 (89.63%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAV D+CKLKFLELK+KR YRFI+F+I+ +Q  V+VEKLG P +TY+DF ASLPA ECRYAV+D+DF+T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K
Sbjct:    1 MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQ--VVVEKLGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIK 133          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 9.623e-55
Identity = 103/135 (76.30%), Postives = 117/135 (86.67%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAV D+CKLKFLELKAKR YRFI+F+I+ +Q  V+VEKLG P + Y+DF   LP  ECRYAVYD+DF TAEN QKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K
Sbjct:    1 MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQ--VVVEKLGSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 133          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.815e-53
Identity = 96/135 (71.11%), Postives = 118/135 (87.41%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN+ASG+AV+D+CK KF ELK +R +RFIVFKI++K  ++ VE+LG+  + YEDFAA+LPA+ECRYAVYD DFVT ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ +
Sbjct:    1 MANSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIR 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53
Identity = 93/135 (68.89%), Postives = 117/135 (86.67%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN++SG+AV D+CK+KF +LKA+R++RFIVF+I++K  ++ V++LGEP Q Y DF  SLPA+ECRYA+YD DF T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ K
Sbjct:    1 MANSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.470e-52
Identity = 92/135 (68.15%), Postives = 116/135 (85.93%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN++SG+AV+D+CK+KF ELK++RT+RFIVF+I++   ++ V++LGEP Q Y DF  SLPA ECRYA+YD DF T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ +
Sbjct:    1 MANSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVR 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 3
Query:  141 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            D+CKLKFLELK KR +RFI+F+I+ +Q  V+VEKLG P +TY+DF ASLPA+ECRYAV+D+DF T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K
Sbjct:    2 DNCKLKFLELK-KRIFRFIIFRIDGQQ--VVVEKLGNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIK 122          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.998e-48
Identity = 83/133 (62.41%), Postives = 116/133 (87.22%), Query Frame = 3
Query:  114 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            NA+SGM V D  K  FLELK K+ +R+++FKI+EK+K+V+VEK G P +++++FAA+LP  +CRYAVYD+DFVT+ENCQKS+IFFIAWSPD++R+R+KM+YA+SK+RF+RELDG+  E+QATDP+EM L+V +
Sbjct:    7 NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLR 139          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.645e-47
Identity = 83/135 (61.48%), Postives = 114/135 (84.44%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN++SG+A+HDDCKLKF EL++KR +RFI F ++ K K++IV+K+G+ T +YEDF +SLP  +CR+A+YD+DF+TAE+  KSRIF+I WSPD A+VRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD  K
Sbjct:    1 MANSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALK 135          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADF_LILLO4.615e-5775.56Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF6_ORYSJ4.615e-5774.81Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF7_ARATH7.872e-5777.04Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF12_ARATH9.623e-5576.30Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF9_ORYSJ1.815e-5371.11Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF2_MAIZE9.007e-5368.89Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF1_MAIZE4.470e-5268.15Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF_BRANA3.542e-4975.00Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF_VITVI2.998e-4862.41Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF4_ORYSJ9.645e-4761.48Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
back to top