BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.252e-46
Identity = 82/138 (59.42%), Postives = 113/138 (81.88%), Query Frame = 3
Query:   99 LETMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            + + +NA+SGM V  D +  FLEL+ K+ +R+++FKIEEKQKQV+VEK G  T++Y+DF ASLP  +CRYA+YD+DFVT EN QKS+IFFIAWSP T+R+R+KM+Y++SKDR K+ELDG   E+QATDP+E+ L+V +
Sbjct:    4 MRSHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLR 141          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.819e-45
Identity = 76/138 (55.07%), Postives = 115/138 (83.33%), Query Frame = 3
Query:   99 LETMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            + + ANA+SG+ V  +CK  FLEL+ K+++R+++FKI++K K+V+VEK G  T++++DF  SLP  +CRYA+YD+DFVT ENCQKS+IFF+AWSP  +R+R+KM+YA+SK+RF+RELDG+  E+QATDPSE+ +++ +
Sbjct:    4 VRSRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLR 141          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.376e-45
Identity = 80/133 (60.15%), Postives = 110/133 (82.71%), Query Frame = 3
Query:  114 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            NA SGM V D+ K  FLEL+ K+T+R++VFKI+E +K+V+VEK G PT++Y+DF ASLP  +CRYAVYD+DFVT+ENCQKS+IFF AWSP T+ +R+K++Y++SKD+  REL GI  E+QATDP+E+ L+V +
Sbjct:   10 NAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLR 142          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.981e-44
Identity = 81/135 (60.00%), Postives = 111/135 (82.22%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANA SG+AV+D+C LKF EL++KR +RFI FK+++K K+++V+++G+   +Y+DF  SLP  +CRYA+YD+DFVTAE+ QKSRIF+I WSP +A+V+SKM+YASS  +FK  L+GIQVELQATD SE+ LD  K
Sbjct:    1 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 71/132 (53.79%), Postives = 105/132 (79.55%), Query Frame = 3
Query:  117 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            A +GM V D+C   F+++K K+ +R+IVFKIEEK ++V V+K+G   ++Y D   SLP ++CRYAV+D+DFVT +NC+KS+IFFIAWSP+ +++R+K++YA+SKD  +R L+GI  ELQATDP+EMG D+ +
Sbjct:    8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQ 139          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.695e-40
Identity = 70/132 (53.03%), Postives = 104/132 (78.79%), Query Frame = 3
Query:  117 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            A  GM V ++C+  F+E+K K+ +RF+V+KI+E+ + V+V+K+G P + YE+  A+LP ++CRYAV+D+DFVT +NCQKS+IFFIAWSP  +R+R+K++YA+SK   +R LDG+  E+QATD SEMG DV +
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIR 139          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 67/121 (55.37%), Postives = 98/121 (80.99%), Query Frame = 3
Query:  141 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            DDCK  F+E+K K+ +R++V+K+EEK ++V V+K+G   ++Y+D AASLP ++CRYAV+D+D+VT +NC+ S+IFFI WSP+ +R+R KM+YA+SK   +R LDG+  ELQATDP+EMG D
Sbjct:    3 DDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFD 123          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.668e-39
Identity = 75/146 (51.37%), Postives = 107/146 (73.29%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE-----------NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANA SG+AV ++CK +F EL+A R +RF+VFKI++  +QV+V+++G     +++  ASLPA+ CRYAVYD+DF  ++              +S+IFF++WSP  A VRSKM+YASS + FK+ELDG+Q++LQATDPSE+ LDV K
Sbjct:    1 MANATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLK 146          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 65/126 (51.59%), Postives = 102/126 (80.95%), Query Frame = 3
Query:  135 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            V +  K  F ELK ++ +R+++FKI++++++++VEK G P ++Y+DF ASLPA++CRYAVYD DFV+ +NC+KS+IFFI+WSP  +R+R+K IYA S+++F+ ELDG+  E+QATDP +M L+V +
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLR 145          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.062e-37
Identity = 81/135 (60.00%), Postives = 100/135 (74.07%), Query Frame = 3
Query:  129 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKL------GEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKR 515
            M +HDDCKL FLELK +RT+R IV+KIE+   QVIVEK       GE  Q+YE+FA SLPA+ECRYA+ D +FV  E     +I FIAWSP TA++R KMIY+S+KDRFKRELDGIQVE  ATD +++ LD  +R
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNM-QVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRR 130          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADF2_ORYSJ6.252e-4659.42Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF11_ORYSJ1.819e-4555.07Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF6_ARATH2.376e-4560.15Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF3_MAIZE9.981e-4460.00Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF5_ARATH1.762e-4053.79Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF5_ORYSJ6.695e-4053.03Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF9_ARATH4.339e-3955.37Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF3_ORYSJ5.668e-3951.37Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]
ADF10_ORYSJ4.798e-3851.59Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF11_ARATH4.062e-3760.00Putative actin-depolymerizing factor 11 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
back to top