BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:98..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT--QTYEDFAA----SLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQAT 479
            SG+ V D+C  +F +LK K  +++I+++IE  + +VIV+ L +    ++Y+D       +L   ECRY + D    T E   ++RI+FI WSPD A+ + KM+YASSK+   R+++GI   L+ T
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT 126          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK--------LGEPTQT-YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKRPCPL 527
            ASG+ V+D+    F E+K          K+  + ++F +   +K++IVE+        +GE  Q  Y  F   LP ++CRY +YD  + T E+ +K  + FI W+PD A ++SKMIYASSKD  K++  GI+ E Q       GLD  K  C L
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVQDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRCTL 149          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 55/154 (35.71%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK--------LGEPT-QTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKRPCPL 527
            ASG+ V+D+    F E+K          K+  + ++F +   +K++IVE+        +GE     Y  F   LP ++CRY +YD  + T E+ +K  + FI W+PD A ++SKMIYASSKD  K++  GI+ E Q       GLD  K  C L
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVPDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRCTL 149          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 494
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 494
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGE---------PTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 494
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEVKKRKKAVIFCLSPDKKCIIVEEGKEILVGDVGVTVTDPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CADF2_PLAF71.040e-1637.60Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
COF2_XENLA1.358e-1636.36Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF1_SHEEP1.358e-1638.69Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG1.358e-1638.69Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA1.358e-1638.69Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN1.358e-1638.69Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF2_XENTR5.162e-1635.71Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
DEST_PIG6.742e-1634.27Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN6.742e-1634.27Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_CHICK6.742e-1634.27Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
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