BQ623404

Overview
NameBQ623404
Unique NameBQ623404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623404_ssr169 microsatellite BQ623404_ssr169:169..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:85..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.123e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSJ (Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSI (Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.810e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 3.087e-41
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:  193 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 468
            S ETYKIY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 STETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126
The following BLAST results are available for this feature:
BLAST of BQ623404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_ORYSJ8.123e-4293.48Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI8.123e-4293.48Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT8.123e-4293.48Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B9_ORYSJ1.386e-4192.39Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI1.386e-4192.39Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_ORYSJ1.386e-4192.39Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_ORYSI1.386e-4192.39Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_MAIZE1.386e-4192.39Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B3_MAIZE1.810e-4191.30Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_ARATH3.087e-4192.39Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00495 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00495 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623404 ID=BQ623404; Name=BQ623404; organism=Citrus sinensis; type=EST; length=575bp
TACAAGCCTTACCTTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAA
GAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCG
AGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAA
GAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGTATCGA
GACTTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATA
TCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGAT
ATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAA
GAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTAC
TTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTT
ACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGGATT
CGGGTGGTATGTGATTTGTGTAGTTAGTAGTTTTAGGCCTTTAATTTTAC
TAGATGAAGTCGTTTATGGTTTTTG
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