BQ623442

Overview
NameBQ623442
Unique NameBQ623442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:337..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.127e-36
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  111 EYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          

HSP 2 Score: 50.0618 bits (118), Expect = 4.127e-36
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLKEI YLL  GW+PCLEFE E G+VY
Sbjct:   81 EQLLKEIEYLLNKGWVPCLEFETEHGFVY 109          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.127e-36
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  111 EYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          

HSP 2 Score: 50.0618 bits (118), Expect = 4.127e-36
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLKEI YLL  GW+PCLEFE E G+VY
Sbjct:   81 EQLLKEIEYLLNKGWVPCLEFETEHGFVY 109          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.127e-36
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E++SSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  112 ENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          

HSP 2 Score: 50.447 bits (119), Expect = 4.127e-36
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LL EI YLL++GW+PCLEFE E+G+VY
Sbjct:   82 EQLLSEIEYLLKNGWVPCLEFETERGFVY 110          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.129e-36
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            EH+ SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPPG
Sbjct:  109 EHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          

HSP 2 Score: 50.447 bits (119), Expect = 4.129e-36
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 2
Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YLLR GWIPCLEFELE G+VY
Sbjct:   81 LAKEVEYLLRKGWIPCLEFELEHGFVY 107          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.003e-36
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            EH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  112 EHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          

HSP 2 Score: 50.8322 bits (120), Expect = 7.003e-36
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLKE+ YLL++GW+PCLEFE E G+VY
Sbjct:   82 EQLLKEVEYLLKNGWVPCLEFETEHGFVY 110          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 9.123e-36
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            EH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          

HSP 2 Score: 45.8246 bits (107), Expect = 9.123e-36
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 2
Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YL+R+ WIPC+EFELE G+VY
Sbjct:   81 LAKEVDYLIRNKWIPCVEFELEHGFVY 107          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.127e-36
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            E+H SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 ENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          

HSP 2 Score: 50.447 bits (119), Expect = 9.127e-36
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 2
Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YLLR GWIPCLEFELE G+VY
Sbjct:   81 LAKEVEYLLRKGWIPCLEFELEHGFVY 107          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.131e-36
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            EH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   99 EHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          

HSP 2 Score: 40.0466 bits (92), Expect = 9.131e-36
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            EALLK++ YL+RS W+PCLEF
Sbjct:   70 EALLKQVDYLIRSKWVPCLEF 90          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.131e-36
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            EH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:  100 EHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          

HSP 2 Score: 40.4318 bits (93), Expect = 9.131e-36
Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            EALLK++ YL+RS W+PCLEF  + G+V+
Sbjct:   71 EALLKQVDYLIRSKWVPCLEFS-KVGFVF 98          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-35
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          

HSP 2 Score: 50.8322 bits (120), Expect = 1.188e-35
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLKE+ YLL++GW+PCLEFE E G+VY
Sbjct:   81 EQLLKEVEYLLKNGWVPCLEFETEHGFVY 109          
The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS2_PETHY4.127e-3675.36Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY4.127e-3675.36Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_SOLLC4.127e-3678.26Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOYBN4.129e-3675.36Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS0_SOLTU7.003e-3675.36Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS1A_ARATH9.123e-3677.94Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_GLYTO9.127e-3675.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU9.131e-3681.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT9.131e-3679.71Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBSC_SOLTU1.188e-3575.36Ribulose bisphosphate carboxylase small chain 2C, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00533 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00533 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bp
TGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTC
CCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCTGTGAGCACCA
CAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGC
CCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAG
GTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAA
CAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCG
TCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGGTTCGG
TTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTT
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