BQ623442

Overview
NameBQ623442
Unique NameBQ623442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.330e-18
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  114 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  100 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160

HSP 2 Score: 30.8018 bits (68), Expect = 2.330e-18
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            E + K++ Y+L + W PCLEF
Sbjct:   57 EQISKQVDYILTNSWTPCLEF 77
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.023e-18
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  114 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169

HSP 2 Score: 30.8018 bits (68), Expect = 3.023e-18
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            E + K++ Y+L + W PCLEF
Sbjct:   66 EQISKQVDYILANAWTPCLEF 86
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.648e-18
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  114 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170

HSP 2 Score: 30.8018 bits (68), Expect = 6.648e-18
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            E + K++ Y+L + W PCLEF
Sbjct:   67 EQISKQVDYILANSWTPCLEF 87
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.644e-18
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:  114 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170

HSP 2 Score: 30.8018 bits (68), Expect = 8.644e-18
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            E + K++ Y+L + W PCLEF
Sbjct:   67 EQISKQVDYILANSWTPCLEF 87
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.644e-18
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:  114 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169

HSP 2 Score: 30.8018 bits (68), Expect = 8.644e-18
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            E + K++ Y+L + W PCLEF
Sbjct:   66 EQISKQVDYILANSWTPCLEF 86
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.904e-17
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  114 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQVQ   FL  +P
Sbjct:  102 YQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161

HSP 2 Score: 32.3426 bits (72), Expect = 1.904e-17
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            + + K++ Y+LR+ W PCLEF
Sbjct:   59 DQITKQVDYILRNNWTPCLEF 79
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 3 
Query:   78 DGCTCEHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            D C      S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:    1 DNCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.835e-14
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 3 
Query:  129 YWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            YWTMWKLP++  T   +VL EV E + EYP+ ++R++GFDN +Q Q +SF+  KP
Sbjct:   52 YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106

HSP 2 Score: 26.1794 bits (56), Expect = 6.835e-14
Identity = 8/21 (38.10%), Postives = 16/21 (76.19%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            + + ++I Y++R G+IP +EF
Sbjct:   22 QQIARQIEYMVREGYIPAVEF 42
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.220e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:  129 YWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            +WTMWKLP +G   A +VL EV E + E P+ ++R+IGFDN +Q Q +SF+  KP
Sbjct:   52 FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106

HSP 2 Score: 25.0238 bits (53), Expect = 1.220e-12
Identity = 9/22 (40.91%), Postives = 16/22 (72.73%), Query Frame = 2 
Query:    2 EALLKEISYLLRSGWIPCLEFE 67
            + + K++ +LL  G+IP +EFE
Sbjct:   22 QQIAKQVEFLLDQGFIPGVEFE 43
[Close]
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.675e-12
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:  129 YWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SF+  KP
Sbjct:   52 YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106

HSP 2 Score: 25.0238 bits (53), Expect = 2.675e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 2 
Query:   14 KEISYLLRSGWIPCLEF 64
            K++ Y+L  G+IP +EF
Sbjct:   26 KQVQYILSQGYIPAVEF 42
The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS2_ACEAT2.330e-1854.10Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS6_ACECL3.023e-1854.10Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS7_ACECL6.648e-1852.46Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_ACEAT8.644e-1852.46Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT8.644e-1852.46Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_BATOE1.904e-1751.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ACECL5.486e-1649.32Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_PROHO6.835e-1450.91Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNY31.220e-1250.91Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_ANASP2.675e-1245.45Ribulose bisphosphate carboxylase small chain OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00533 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00533 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bp
TGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTC
CCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCTGTGAGCACCA
CAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGC
CCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAG
GTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAA
CAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCG
TCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGGTTCGG
TTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTT
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