BQ623442 | Citrus Genome Database

Overview


Name	BQ623442
Unique Name	BQ623442
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	449

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12425	contig	Csv1_Contig12425:337..783.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-35
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179

HSP 2 Score: 50.8322 bits (120), Expect = 1.188e-35
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2

Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLKE+ YLL++GW+PCLEFE E G+VY
Sbjct:   81 EQLLKEVEYLLKNGWVPCLEFETEHGFVY 109

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-35
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179

HSP 2 Score: 50.8322 bits (120), Expect = 1.188e-35
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2

Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLKE+ YLL++GW+PCLEFE E G+VY
Sbjct:   81 EQLLKEVEYLLKNGWVPCLEFETEHGFVY 109

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.548e-35
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179

HSP 2 Score: 41.9726 bits (97), Expect = 1.548e-35
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2

Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            EAL+K+I YLLRS WIPCLEF   KG+V+
Sbjct:   82 EALVKQIEYLLRSKWIPCLEF-CPKGFVW 109

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.596e-35
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            EH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   38 EHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106

HSP 2 Score: 40.0466 bits (92), Expect = 1.596e-35
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 2

Query:    2 EALLKEISYLLRSGWIPCLEF 64
            EALLK++ YL+RS W+PCLEF
Sbjct:    9 EALLKQVDYLIRSKWVPCLEF 29

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.016e-35
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176

HSP 2 Score: 46.595 bits (109), Expect = 2.016e-35
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2

Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YLLR+ WIPC+EFELE G+VY
Sbjct:   81 LAKEVDYLLRNKWIPCVEFELEHGFVY 107

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.627e-35
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            EH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

HSP 2 Score: 46.595 bits (109), Expect = 2.627e-35
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2

Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YLLR+ WIPC+EFELE G+VY
Sbjct:   81 LAKEVDYLLRNKWIPCVEFELEHGFVY 107

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.627e-35
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            EH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

HSP 2 Score: 46.595 bits (109), Expect = 2.627e-35
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2

Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YLLR+ WIPC+EFELE G+VY
Sbjct:   81 LAKEVDYLLRNKWIPCVEFELEHGFVY 107

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.627e-35
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            EH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

HSP 2 Score: 46.595 bits (109), Expect = 2.627e-35
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2

Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            L KE+ YLLR+ WIPC+EFELE G+VY
Sbjct:   81 LAKEVDYLLRNKWIPCVEFELEHGFVY 107

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.627e-35
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179

HSP 2 Score: 49.2914 bits (116), Expect = 2.627e-35
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2

Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LL EI YLL++GW+PCLEFE E G+VY
Sbjct:   81 EQLLSEIEYLLKNGWVPCLEFETEHGFVY 109

[Close]

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.627e-35
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  112 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180

HSP 2 Score: 49.6766 bits (117), Expect = 2.627e-35
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 2

Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LL+E+ YLL++GW+PCLEFE E G+VY
Sbjct:   82 EQLLREVEYLLKNGWVPCLEFETEHGFVY 110

The following BLAST results are available for this feature:

BLAST of BQ623442 vs. ExPASy Swiss-Prot

BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
RBSB_SOLTU	1.188e-35	75.36	Ribulose bisphosphate carboxylase small chain 2B, ...	[more]
RBSA_SOLTU	1.188e-35	75.36	Ribulose bisphosphate carboxylase small chain 2A, ...	[more]
RBS_MUSAC	1.548e-35	79.71	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS3_WHEAT	1.596e-35	79.71	Ribulose bisphosphate carboxylase small chain clon...	[more]
RBS_RAPSA	2.016e-35	76.47	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS3B_ARATH	2.627e-35	76.47	Ribulose bisphosphate carboxylase small chain 3B, ...	[more]
RBS2B_ARATH	2.627e-35	76.47	Ribulose bisphosphate carboxylase small chain 2B, ...	[more]
RBS1B_ARATH	2.627e-35	76.47	Ribulose bisphosphate carboxylase small chain 1B, ...	[more]
RBS2A_SOLLC	2.627e-35	76.81	Ribulose bisphosphate carboxylase small chain 2A, ...	[more]
RBS2_NICSY	2.627e-35	75.36	Ribulose bisphosphate carboxylase small chain S41,...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00533 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00533 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bp
TGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTC
CCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCTGTGAGCACCA
CAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGC
CCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAG
GTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAA
CAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCG
TCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGGTTCGG
TTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTT