BQ623442
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.627e-35 Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV YP +FVRIIGFDN RQVQCISF+A P
Sbjct: 111 EHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177 HSP 2 Score: 54.6842 bits (130), Expect = 2.627e-35 Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
+ LLKE+ YLLR GW+PCLEFELEKG+VY
Sbjct: 81 DQLLKEVEYLLRKGWVPCLEFELEKGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.627e-35 Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV YP +FVRIIGFDN RQVQCISF+A P
Sbjct: 111 EHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177 HSP 2 Score: 54.6842 bits (130), Expect = 2.627e-35 Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
+ LLKE+ YLLR GW+PCLEFELEKG+VY
Sbjct: 81 DQLLKEVEYLLRKGWVPCLEFELEKGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.455e-35 Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
EH PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P + RIIGFDN RQVQCISFLA KPPG
Sbjct: 113 EHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181 HSP 2 Score: 50.447 bits (119), Expect = 4.455e-35 Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L E+ YLLRSGWIPCLEFELE G VY
Sbjct: 83 EQLASEVEYLLRSGWIPCLEFELEHGLVY 111
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 4.457e-35 Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct: 109 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176 HSP 2 Score: 45.4394 bits (106), Expect = 4.457e-35 Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 14 KEISYLLRSGWIPCLEFELEKGWVY 88
KE+ YLLR+ WIPC+EFELE G+VY
Sbjct: 83 KEVDYLLRNKWIPCVEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 4.457e-35 Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct: 109 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176 HSP 2 Score: 45.4394 bits (106), Expect = 4.457e-35 Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 14 KEISYLLRSGWIPCLEFELEKGWVY 88
KE+ YLLR+ WIPC+EFELE G+VY
Sbjct: 83 KEVDYLLRNKWIPCVEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.457e-35 Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct: 111 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 48.9062 bits (115), Expect = 4.457e-35 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LL E+ YLL++GW+PCLEFE E G+VY
Sbjct: 81 EQLLSEVEYLLKNGWVPCLEFETEHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.457e-35 Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct: 111 ENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 48.9062 bits (115), Expect = 4.457e-35 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LL E+ YLL++GW+PCLEFE E G+VY
Sbjct: 81 EQLLSEVEYLLKNGWVPCLEFETEHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.459e-35 Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
EH+ S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E + YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct: 109 EHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176 HSP 2 Score: 50.447 bits (119), Expect = 4.459e-35 Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLR GWIPCLEFELE G+VY
Sbjct: 81 LAKEVEYLLRKGWIPCLEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 5.811e-35 Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
EH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct: 99 EHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167 HSP 2 Score: 38.1206 bits (87), Expect = 5.811e-35 Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
EAL K++ YL+RS W+PCLEF + G+V+
Sbjct: 70 EALSKQVDYLIRSKWVPCLEFS-KVGFVF 97
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 7.559e-35 Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 302
EH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct: 113 EHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182 HSP 2 Score: 44.669 bits (104), Expect = 7.559e-35 Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR IPCLEFELE G+VY
Sbjct: 83 EQLAKEVDYLLRKNLIPCLEFELEHGFVY 111 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |