BQ623442
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.559e-35 Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP + RIIGFDN RQVQCISFLA KP G Sbjct: 113 EYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181 HSP 2 Score: 50.447 bits (119), Expect = 7.559e-35 Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E L KE+ YLLR GW+PCLEFELE G VY Sbjct: 83 EQLAKEVEYLLRKGWVPCLEFELEHGTVY 111
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.850e-35 Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+H SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG Sbjct: 111 ENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179 HSP 2 Score: 43.5134 bits (101), Expect = 9.850e-35 Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 LL ++ YLL +GWIPC+EFELE +VY Sbjct: 83 LLAQVQYLLNNGWIPCIEFELEHPFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.859e-35 Identity = 50/69 (72.46%), Postives = 62/69 (89.86%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ SSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G Sbjct: 104 ENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172 HSP 2 Score: 47.3654 bits (111), Expect = 9.859e-35 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 L KE+ YLLR+ W+PCLEFELE G+VY Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVY 102
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.283e-34 Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293 EH SSPGYYDGRYWTMWKLPM+GCTDATQV EV E +K YP + +RIIGFDN RQVQCISF+A KP Sbjct: 111 EHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177 HSP 2 Score: 49.2914 bits (116), Expect = 1.283e-34 Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E LL EI YLL++GW+PCLEFE E G+VY Sbjct: 81 EQLLSEIEYLLKNGWVPCLEFETEHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.672e-34 Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293 +++SSPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISF+A+ P Sbjct: 109 QYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175 HSP 2 Score: 52.7582 bits (125), Expect = 1.672e-34 Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E LLKE+ YLLR GW+PC+EFELEKG+V+ Sbjct: 79 EQLLKEVEYLLRKGWVPCVEFELEKGFVH 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.835e-34 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293 E+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISF+A P Sbjct: 111 ENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177 HSP 2 Score: 53.5286 bits (127), Expect = 2.835e-34 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E L KE+ YL+R GWIPCLEFELEKG+VY Sbjct: 81 EQLAKEVEYLIRKGWIPCLEFELEKGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.837e-34 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G Sbjct: 109 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177 HSP 2 Score: 47.3654 bits (111), Expect = 2.837e-34 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 L KE+ YLLR+ W+PCLEFELE G+VY Sbjct: 81 LAKEVDYLLRNKWVPCLEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.837e-34 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G Sbjct: 109 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177 HSP 2 Score: 47.3654 bits (111), Expect = 2.837e-34 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 L KE+ YLLR+ W+PCLEFELE G+VY Sbjct: 81 LAKEVDYLLRNKWVPCLEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.838e-34 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G Sbjct: 104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172 HSP 2 Score: 47.3654 bits (111), Expect = 2.838e-34 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 L KE+ YLLR+ W+PCLEFELE G+VY Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVY 102
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.838e-34 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G Sbjct: 104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172 HSP 2 Score: 47.3654 bits (111), Expect = 2.838e-34 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 L KE+ YLLR+ W+PCLEFELE G+VY Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVY 102 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |