BQ623442
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.838e-34 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct: 104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172 HSP 2 Score: 47.3654 bits (111), Expect = 2.838e-34 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLR+ W+PCLEFELE G+VY
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVY 102
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.697e-34 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct: 104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172 HSP 2 Score: 47.3654 bits (111), Expect = 3.697e-34 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLR+ W+PCLEFELE G+VY
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVY 102
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 4.815e-34 Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct: 100 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 HSP 2 Score: 40.817 bits (94), Expect = 4.815e-34 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LLK+I YLLRS W+PCLEF + G+VY
Sbjct: 71 EDLLKQIEYLLRSKWVPCLEFS-KVGFVY 98
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.815e-34 Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct: 100 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 HSP 2 Score: 40.817 bits (94), Expect = 4.815e-34 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LLK+I YLLRS W+PCLEF + G+VY
Sbjct: 71 EDLLKQIEYLLRSKWVPCLEFS-KVGFVY 98
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 4.815e-34 Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct: 100 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 HSP 2 Score: 40.817 bits (94), Expect = 4.815e-34 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E LLK+I YLLRS W+PCLEF + G+VY
Sbjct: 71 EDLLKQIEYLLRSKWVPCLEFS-KVGFVY 98
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 8.157e-34 Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
E++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct: 113 ENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180 HSP 2 Score: 45.4394 bits (106), Expect = 8.157e-34 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+L K+I YL+ GWIPCLEFELE +VY
Sbjct: 83 ESLAKQIEYLILKGWIPCLEFELEHPFVY 111
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.062e-33 Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+H SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP G
Sbjct: 113 ENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181 HSP 2 Score: 43.1282 bits (100), Expect = 1.062e-33 Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
LL ++ YLL GWIPC+EFELE +VY
Sbjct: 85 LLAQVQYLLNKGWIPCIEFELEHPFVY 111
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.063e-33 Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
EHH+SPGYYDGRYWTMWKLPM+GCTD QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SF+A KP G
Sbjct: 111 EHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179 HSP 2 Score: 40.4318 bits (93), Expect = 1.063e-33 Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
+ L +++ YLL + W+PCLEFE + G+VY
Sbjct: 81 DQLARQVDYLLNNKWVPCLEFETDHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.064e-33 Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct: 104 ENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170 HSP 2 Score: 47.3654 bits (111), Expect = 1.064e-33 Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLR+ W+PCLEFELE G+VY
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVY 102
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.383e-33 Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISF+A KP
Sbjct: 113 ENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179 HSP 2 Score: 44.669 bits (104), Expect = 1.383e-33 Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE YLLR+GW+PC+EF++ G+VY
Sbjct: 83 EQLSKECDYLLRNGWVPCVEFDIGSGFVY 111 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |