BQ623442
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.804e-33 Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
E+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI F+A++P G
Sbjct: 109 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177 HSP 2 Score: 46.9802 bits (110), Expect = 1.804e-33 Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLR W+PCLEFELE G+VY
Sbjct: 81 LAKEVDYLLRKKWVPCLEFELEHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.980e-33 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct: 115 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181 HSP 2 Score: 47.7506 bits (112), Expect = 3.980e-33 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+LLKE+ YLL +GW+PCLEFE G+VY
Sbjct: 85 ESLLKEVQYLLNNGWVPCLEFEPTHGFVY 113
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.982e-33 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct: 111 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177 HSP 2 Score: 47.7506 bits (112), Expect = 3.982e-33 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+LLKE+ YLL +GW+PCLEFE G+VY
Sbjct: 81 ESLLKEVQYLLNNGWVPCLEFEPTHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.982e-33 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct: 112 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178 HSP 2 Score: 47.7506 bits (112), Expect = 3.982e-33 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+LLKE+ YLL +GW+PCLEFE G+VY
Sbjct: 82 ESLLKEVQYLLNNGWVPCLEFEPTHGFVY 110
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.986e-33 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISF+A KP
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176 HSP 2 Score: 39.6614 bits (91), Expect = 3.986e-33 Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR+ W+PC+EF E G+VY
Sbjct: 81 EDLAKEVDYLLRNDWVPCIEFSKE-GFVY 108
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.986e-33 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISF+A KP
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176 HSP 2 Score: 39.6614 bits (91), Expect = 3.986e-33 Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR+ W+PC+EF E G+VY
Sbjct: 81 EDLAKEVDYLLRNDWVPCIEFSKE-GFVY 108
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.986e-33 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISF+A KP
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176 HSP 2 Score: 39.6614 bits (91), Expect = 3.986e-33 Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR+ W+PC+EF E G+VY
Sbjct: 81 EDLAKEVDYLLRNDWVPCIEFSKE-GFVY 108
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.986e-33 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISF+A KP
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176 HSP 2 Score: 39.6614 bits (91), Expect = 3.986e-33 Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR+ W+PC+EF E G+VY
Sbjct: 81 EDLAKEVDYLLRNDWVPCIEFSKE-GFVY 108
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.986e-33 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISF+A KP
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176 HSP 2 Score: 39.6614 bits (91), Expect = 3.986e-33 Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR+ W+PC+EF E G+VY
Sbjct: 81 EDLAKEVDYLLRNDWVPCIEFSKE-GFVY 108
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 5.186e-33 Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+H SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP
Sbjct: 114 ENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180 HSP 2 Score: 43.1282 bits (100), Expect = 5.186e-33 Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
LL ++ YLL GWIPC+EFELE +VY
Sbjct: 86 LLAQVQYLLNKGWIPCIEFELEHPFVY 112 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |