BQ623442
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.186e-33 Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct: 112 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178 HSP 2 Score: 46.9802 bits (110), Expect = 5.186e-33 Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+L+KE+ YLL +GW+PCLEFE G+VY
Sbjct: 82 ESLMKEVQYLLNNGWVPCLEFEPTHGFVY 110
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.186e-33 Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct: 111 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177 HSP 2 Score: 46.9802 bits (110), Expect = 5.186e-33 Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+L+KE+ YLL +GW+PCLEFE G+VY
Sbjct: 81 ESLMKEVQYLLNNGWVPCLEFEPTHGFVY 109
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 8.801e-33 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SF+ KP
Sbjct: 112 DNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178 HSP 2 Score: 44.669 bits (104), Expect = 8.801e-33 Identity = 17/24 (70.83%), Postives = 22/24 (91.67%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELE 73
E+LLK+I YL+R+GW+PCLEF LE
Sbjct: 83 ESLLKQIEYLIRNGWVPCLEFSLE 106
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 8.801e-33 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SF+ KP
Sbjct: 112 DNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178 HSP 2 Score: 44.669 bits (104), Expect = 8.801e-33 Identity = 17/24 (70.83%), Postives = 22/24 (91.67%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELE 73
E+LLK+I YL+R+GW+PCLEF LE
Sbjct: 83 ESLLKQIEYLIRNGWVPCLEFSLE 106
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.146e-32 Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
++ S P YYDGRYWTMWKLPM+GCTD+ QVL+E+ +KEYP++F+RIIGFDN RQVQCISF+A KP G
Sbjct: 113 KYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181 HSP 2 Score: 47.7506 bits (112), Expect = 1.146e-32 Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 2
Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
L KE+ YLLRS WIPCLEFELE+G+V+
Sbjct: 85 LAKEVDYLLRSKWIPCLEFELEEGFVH 111
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.146e-32 Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISF+A KP
Sbjct: 109 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175 HSP 2 Score: 46.9802 bits (110), Expect = 1.146e-32 Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E+L+KE+ YLL +GW+PCLEFE G+VY
Sbjct: 79 ESLMKEVQYLLNNGWVPCLEFEPTHGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.944e-32 Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SF+ +P
Sbjct: 112 DNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178 HSP 2 Score: 44.669 bits (104), Expect = 1.944e-32 Identity = 17/24 (70.83%), Postives = 22/24 (91.67%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELE 73
E+LLK+I YL+R+GW+PCLEF LE
Sbjct: 83 ESLLKQIEYLIRNGWVPCLEFSLE 106
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 2.535e-32 Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
E+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISF+A KP
Sbjct: 106 ENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172 HSP 2 Score: 39.6614 bits (91), Expect = 2.535e-32 Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
E L KE+ YLLR+ W+PC+EF E G+VY
Sbjct: 77 EDLAKEVDYLLRNDWVPCIEFSKE-GFVY 104
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.343e-32 Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
EH+ SP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISF+A P
Sbjct: 67 EHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133 HSP 2 Score: 51.6026 bits (122), Expect = 4.343e-32 Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
+ LLKE+ YLLR GW+PCLEFEL KG+VY
Sbjct: 37 DQLLKEVEYLLRKGWVPCLEFELLKGFVY 65
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.593e-32 Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 3
Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
+++ SPGYYDGRYWTMWKLPM+GCT A QV+KE E +KEYP +F+R+IGFDN RQVQC+SF+ KP
Sbjct: 112 DNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178 HSP 2 Score: 44.669 bits (104), Expect = 5.593e-32 Identity = 17/24 (70.83%), Postives = 22/24 (91.67%), Query Frame = 2
Query: 2 EALLKEISYLLRSGWIPCLEFELE 73
E+LLK+I YL+R+GW+PCLEF LE
Sbjct: 83 ESLLKQIEYLIRNGWVPCLEFSLE 106 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |