BQ623442

Overview
NameBQ623442
Unique NameBQ623442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:337..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.596e-32
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            E++ SPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISF+A KP
Sbjct:  110 ENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          

HSP 2 Score: 44.669 bits (104), Expect = 5.596e-32
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E+LLKEI+YLL  GW+PCLEFE+    VY
Sbjct:   80 ESLLKEINYLLIKGWVPCLEFEVGPAHVY 108          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.288e-32
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISFL  KP G
Sbjct:  109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          

HSP 2 Score: 37.7354 bits (86), Expect = 7.288e-32
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E L +E+ YL+R+GWIPC+EF  + G+VY
Sbjct:   80 EQLGQEVDYLIRNGWIPCIEF-CKVGFVY 107          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.855e-31
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            EH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+A+KPPG
Sbjct:  100 EHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          

HSP 2 Score: 38.5058 bits (88), Expect = 7.855e-31
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEF 64
            E LLK++ YL+RS W+PCLEF
Sbjct:   71 EGLLKQVDYLIRSKWVPCLEF 91          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.832e-30
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SF+A KPPG
Sbjct:  100 ENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          

HSP 2 Score: 41.5874 bits (96), Expect = 3.832e-30
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 2
Query:    8 LLKEISYLLRSGWIPCLEFELEKGWVY 88
            LLK++ YLLR+GWIPCLEF  + G+VY
Sbjct:   73 LLKQVDYLLRNGWIPCLEFS-KVGFVY 98          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.497e-30
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            +++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISF+  KP
Sbjct:  104 KYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          

HSP 2 Score: 41.9726 bits (97), Expect = 6.497e-30
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELE 73
            E L+KE+ YLLR+ W+PCLEF+LE
Sbjct:   75 EQLVKEVEYLLRNKWVPCLEFDLE 98          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.461e-29
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 3
Query:   75 KDGCTC-EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            KDG    EH  SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISF+A KP G
Sbjct:   47 KDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          

HSP 2 Score: 41.5874 bits (96), Expect = 1.461e-29
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LL E++YLL  GWIP LEFE++ G+VY
Sbjct:   24 EQLLAEVNYLLVKGWIPPLEFEVKDGFVY 52          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.425e-29
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  102 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293
            +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISF+  KP
Sbjct:  123 NSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          

HSP 2 Score: 38.5058 bits (88), Expect = 2.425e-29
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFE 67
            E L+KE+ YLL++ W+PCLEFE
Sbjct:   91 EQLVKEVEYLLKNKWVPCLEFE 112          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.639e-29
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296
            EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   10 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.574e-24
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 3
Query:   93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299
            E+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++F+A KP G
Sbjct:   99 ENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          

HSP 2 Score: 41.9726 bits (97), Expect = 1.574e-24
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88
            E LLK++ YLLR+ W+PCLEF  E G+VY
Sbjct:   70 EQLLKQVDYLLRNNWVPCLEFSKE-GFVY 97          
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.461e-24
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 3
Query:   87 TCEHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFLAAKP 293
            T E  + PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SF+  +P
Sbjct:  109 TREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          

HSP 2 Score: 37.7354 bits (86), Expect = 3.461e-24
Identity = 12/24 (50.00%), Postives = 21/24 (87.50%), Query Frame = 2
Query:    2 EALLKEISYLLRSGWIPCLEFELE 73
            +AL K+I Y+++SGW PC+EF+++
Sbjct:   82 DALAKQIDYVIKSGWAPCIEFDVQ 105          
The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS_SILPR5.596e-3274.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE7.288e-3276.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA7.855e-3172.46Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE3.832e-3068.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH6.497e-3067.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL1.461e-2967.11Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_LARLA2.425e-2971.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SINAL9.639e-2977.94Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_SACHY1.574e-2460.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA3.461e-2458.57Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00533 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00533 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bp
TGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTC
CCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCTGTGAGCACCA
CAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGC
CCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAG
GTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAA
CAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCG
TCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGGTTCGG
TTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTT
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