BQ623442
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.596e-32 Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293 E++ SPGYYDGRYWTMWKLPM+GCTDA+QV EV E + YP + VRIIGFDNKRQVQCISF+A KP Sbjct: 110 ENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176 HSP 2 Score: 44.669 bits (104), Expect = 5.596e-32 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E+LLKEI+YLL GW+PCLEFE+ VY Sbjct: 80 ESLLKEINYLLIKGWVPCLEFEVGPAHVY 108
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.288e-32 Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E K YP F RIIGFDN RQVQCISFL KP G Sbjct: 109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177 HSP 2 Score: 37.7354 bits (86), Expect = 7.288e-32 Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E L +E+ YL+R+GWIPC+EF + G+VY Sbjct: 80 EQLGQEVDYLIRNGWIPCIEF-CKVGFVY 107
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 7.855e-31 Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 EH+ SPGYYDGRYWTMWKLPM+GC TQV+ EV EV+KEYP + RIIGFDN RQVQ +SF+A+KPPG Sbjct: 100 EHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168 HSP 2 Score: 38.5058 bits (88), Expect = 7.855e-31 Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEF 64 E LLK++ YL+RS W+PCLEF Sbjct: 71 EGLLKQVDYLIRSKWVPCLEF 91
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.832e-30 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+SF+A KPPG Sbjct: 100 ENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168 HSP 2 Score: 41.5874 bits (96), Expect = 3.832e-30 Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 8 LLKEISYLLRSGWIPCLEFELEKGWVY 88 LLK++ YLLR+GWIPCLEF + G+VY Sbjct: 73 LLKQVDYLLRNGWIPCLEFS-KVGFVY 98
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 6.497e-30 Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293 +++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCISF+ KP Sbjct: 104 KYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170 HSP 2 Score: 41.9726 bits (97), Expect = 6.497e-30 Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELE 73 E L+KE+ YLLR+ W+PCLEF+LE Sbjct: 75 EQLVKEVEYLLRNKWVPCLEFDLE 98
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.461e-29 Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 75 KDGCTC-EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 KDG EH SPGYYDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISF+A KP G Sbjct: 47 KDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122 HSP 2 Score: 41.5874 bits (96), Expect = 1.461e-29 Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E LL E++YLL GWIP LEFE++ G+VY Sbjct: 24 EQLLAEVNYLLVKGWIPPLEFEVKDGFVY 52
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.425e-29 Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 3 Query: 102 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 293 +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCISF+ KP Sbjct: 123 NSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186 HSP 2 Score: 38.5058 bits (88), Expect = 2.425e-29 Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFE 67 E L+KE+ YLL++ W+PCLEFE Sbjct: 91 EQLVKEVEYLLKNKWVPCLEFE 112
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 9.639e-29 Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 296 EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP Sbjct: 10 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.574e-24 Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 3 Query: 93 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 299 E+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Q ++F+A KP G Sbjct: 99 ENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166 HSP 2 Score: 41.9726 bits (97), Expect = 1.574e-24 Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELEKGWVY 88 E LLK++ YLLR+ W+PCLEF E G+VY Sbjct: 70 EQLLKQVDYLLRNNWVPCLEFSKE-GFVY 97
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.461e-24 Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 3 Query: 87 TCEHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFLAAKP 293 T E + PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SF+ +P Sbjct: 109 TREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178 HSP 2 Score: 37.7354 bits (86), Expect = 3.461e-24 Identity = 12/24 (50.00%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 2 EALLKEISYLLRSGWIPCLEFELE 73 +AL K+I Y+++SGW PC+EF+++ Sbjct: 82 DALAKQIDYVIKSGWAPCIEFDVQ 105 The following BLAST results are available for this feature:
BLAST of BQ623442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623442 ID=BQ623442; Name=BQ623442; organism=Citrus sinensis; type=EST; length=449bpback to top |