BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.026e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 34.2686 bits (77), Expect = 8.026e-31
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  193 SFDPLGLAEDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.026e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 35.8094 bits (81), Expect = 8.026e-31
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  195 SFDPLGLADDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.026e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 35.8094 bits (81), Expect = 8.026e-31
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  194 SFDPLGLADDPEAFAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.045e-30
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  213 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

HSP 2 Score: 35.8094 bits (81), Expect = 1.045e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  197 SFDPLGLADDPEAFAE 212
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.360e-30
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            VKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  222 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 33.113 bits (74), Expect = 1.360e-30
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 2 
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDP+AFA+
Sbjct:  207 FDPLGLADDPDAFAD 221
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.360e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  222 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 34.2686 bits (77), Expect = 1.360e-30
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 2 
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDP+AFAE
Sbjct:  207 FDPLGLADDPDAFAE 221
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.360e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 34.2686 bits (77), Expect = 1.360e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  202 SFDPLGLAEDPEAFAE 217
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.772e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 34.2686 bits (77), Expect = 1.772e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.772e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 34.2686 bits (77), Expect = 1.772e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  194 SFDPLGLAEDPEAFAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.772e-30
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 35.8094 bits (81), Expect = 1.772e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  195 SFDPLGLADDPEAFAE 210
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB22_TOBAC8.026e-3198.25Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2G_SOLLC8.026e-3196.49Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_PETSP8.026e-3196.49Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA1.045e-3094.74Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2A_PYRPY1.360e-3098.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY1.360e-3096.49Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2B_PINSY1.360e-3096.49Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_PETSP1.772e-3096.49Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC1.772e-3096.49Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB27_TOBAC1.772e-3094.74Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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