BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.907e-29
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

HSP 2 Score: 35.8094 bits (81), Expect = 1.907e-29
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDP+AFAE
Sbjct:  193 AFDPLGLADDPDAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.907e-29
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

HSP 2 Score: 36.965 bits (84), Expect = 1.907e-29
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEAFAE
Sbjct:  193 AFDPLGLADDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.232e-29
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

HSP 2 Score: 36.965 bits (84), Expect = 3.232e-29
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEAFAE
Sbjct:  193 AFDPLGLADDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.479e-29
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  209 LKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 34.2686 bits (77), Expect = 5.479e-29
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAF E
Sbjct:  193 SFDPLGLADDPEAFGE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.479e-29
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 2 Score: 36.965 bits (84), Expect = 5.479e-29
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEAFAE
Sbjct:  193 AFDPLGLADDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.134e-29
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

HSP 2 Score: 33.8834 bits (76), Expect = 7.134e-29
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEA AE
Sbjct:  194 AFDPLGLADDPEACAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.399e-29
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   94 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

HSP 2 Score: 33.4982 bits (75), Expect = 9.399e-29
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEA AE
Sbjct:   78 AFDPLGLADDPEAKAE 93
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.574e-28
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

HSP 2 Score: 35.8094 bits (81), Expect = 1.574e-28
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  193 SFDPLGLADDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.579e-28
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  172 LKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228

HSP 2 Score: 30.8018 bits (68), Expect = 1.579e-28
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+ PEAFAE
Sbjct:  156 SFDPLGLAEVPEAFAE 171
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.050e-28
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  211 LKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267

HSP 2 Score: 34.2686 bits (77), Expect = 2.050e-28
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_GOSHI1.907e-2992.98Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC1.907e-2991.23Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC3.232e-2989.47Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_MAIZE5.479e-2991.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP5.479e-2989.47Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PINTH7.134e-2992.98Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_PINSY9.399e-2992.98Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB23_POLMU1.574e-2887.72Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PEA1.579e-2892.98Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_PETSP2.050e-2889.47Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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