BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.783e-23
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 242
            +KVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  200 LKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          

HSP 2 Score: 33.113 bits (74), Expect = 3.783e-23
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDP+ FAE
Sbjct:  184 SFDPLGLADDPDTFAE 199          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.389e-22
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 242
            +KVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  197 LKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          

HSP 2 Score: 33.113 bits (74), Expect = 2.389e-22
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDP+ FAE
Sbjct:  181 SFDPLGLADDPDTFAE 196          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.907e-22
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 245
            +KVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  197 LKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          

HSP 2 Score: 32.7278 bits (73), Expect = 8.907e-22
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDP+ FAE
Sbjct:  182 FDPLGLADDPDTFAE 196          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.858e-20
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 245
            +KVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  212 LKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          

HSP 2 Score: 28.1054 bits (61), Expect = 6.858e-20
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 2
Query:   29 AFDPLGLADDPEAFAE 76
            +FD LGLA+D EAFAE
Sbjct:  196 SFDSLGLAEDTEAFAE 211          

HSP 3 Score: 22.3274 bits (46), Expect = 6.858e-20
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:    1 VTDPLYPG 24
            VTDPLYPG
Sbjct:  188 VTDPLYPG 195          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.357e-14
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 242
            +KVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   66 LKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          

HSP 2 Score: 30.8018 bits (68), Expect = 2.357e-14
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDP+ F E
Sbjct:   51 FDPLGLADDPDTFPE 65          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.535e-14
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 212
            +K+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  221 LKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          

HSP 2 Score: 22.3274 bits (46), Expect = 6.535e-14
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1
Query:    7 DPLYPGGSL*S-IGFG 51
            DP YPGG L + +GFG
Sbjct:  197 DPAYPGGPLFNPLGFG 212          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.181e-14
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 212
            +KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  221 LKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   69 LLSVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 212
            L  +K+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  220 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB2_CHLMO3.783e-2381.82Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE2.389e-2278.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE8.907e-2276.79Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO6.858e-2076.79Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_EUGGR2.357e-1460.71Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC6.535e-1471.11Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB26_ARATH7.181e-1475.56Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_PEA1.354e-1262.50Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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