BQ623446 | Citrus Genome Database

Overview


Name	BQ623446
Unique Name	BQ623446
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	445

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623446_ssr307	microsatellite	BQ623446_ssr307:307..318.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13763	contig	Csv1_Contig13763:264..707.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 2.630e-32
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146

HSP 2 Score: 33.4982 bits (75), Expect = 2.630e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 2.630e-32
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146

HSP 2 Score: 33.4982 bits (75), Expect = 2.630e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.630e-32
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146

HSP 2 Score: 33.4982 bits (75), Expect = 2.630e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 2.630e-32
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146

HSP 2 Score: 33.4982 bits (75), Expect = 2.630e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.425e-32
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146

HSP 2 Score: 33.4982 bits (75), Expect = 3.425e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.459e-32
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  ++QIYAIRQ+I+KALVAFYQKYVDE SKKEIKDILV+YDRTLLV DPRRCEPKKFGG GARAR+QKSYR
Sbjct:   77 GGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148

HSP 2 Score: 31.5722 bits (70), Expect = 4.459e-32
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RV GGGH
Sbjct:   65 FAGVDIRVRVSGGGH 79

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.566e-32
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++Q+YAIRQ+I+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   73 KGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146

HSP 2 Score: 33.4982 bits (75), Expect = 7.566e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RVKGGGH
Sbjct:   63 FAGVDIRVRVKGGGH 77

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.282e-31
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            + G  ++Q+YAIRQ+I+KAL+AFYQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:   78 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151

HSP 2 Score: 30.0314 bits (66), Expect = 1.282e-31
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            F+GVD+R+ VKGGGH
Sbjct:   68 FSGVDIRVTVKGGGH 82

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.833e-31
Identity = 58/72 (80.56%), Postives = 67/72 (93.06%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  ++QIYAIRQ+I+KALV+FYQKYVDE S+KE+KDIL +YDRTLLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:   77 GGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148

HSP 2 Score: 31.9574 bits (71), Expect = 2.833e-31
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+RIRV GGGH
Sbjct:   65 FAGVDIRIRVSGGGH 79

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.711e-28
Identity = 56/74 (75.68%), Postives = 68/74 (91.89%), Query Frame = 2

Query:   32 RAGDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            R G +++QIYAIRQ+IAK++VA++QKYVDE+SK EIK  ++ YDR+LLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   74 RGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLLVADPRRCEPKKFGGRGARARFQKSYR 147

HSP 2 Score: 25.0238 bits (53), Expect = 2.711e-28
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGG 42
            F+ VD+R+RV+GGG
Sbjct:   64 FSQVDIRVRVRGGG 77

The following BLAST results are available for this feature:

BLAST of BQ623446 vs. ExPASy Swiss-Prot

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32


Match Name	E-value	Identity	Description
RS16_PIG	2.630e-32	81.08	40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P...	[more]
RS16_MOUSE	2.630e-32	81.08	40S ribosomal protein S16 OS=Mus musculus GN=Rps16...	[more]
RS16_HUMAN	2.630e-32	81.08	40S ribosomal protein S16 OS=Homo sapiens GN=RPS16...	[more]
RS16_BOVIN	2.630e-32	81.08	40S ribosomal protein S16 OS=Bos taurus GN=RPS16 P...	[more]
RS16_ICTPU	3.425e-32	79.73	40S ribosomal protein S16 OS=Ictalurus punctatus G...	[more]
RS16_DROME	4.459e-32	84.72	40S ribosomal protein S16 OS=Drosophila melanogast...	[more]
RS16_HETFO	7.566e-32	78.38	40S ribosomal protein S16 OS=Heteropneustes fossil...	[more]
RS16_SPOFR	1.282e-31	79.73	40S ribosomal protein S16 OS=Spodoptera frugiperda...	[more]
RS16_AEDAE	2.833e-31	80.56	40S ribosomal protein S16 OS=Aedes aegypti GN=RpS1...	[more]
RS16_DICDI	2.711e-28	75.68	40S ribosomal protein S16 OS=Dictyostelium discoid...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00537 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00537 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623446 ID=BQ623446; Name=BQ623446; organism=Citrus sinensis; type=EST; length=445bp
TTCGCCGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACTGT
CGCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTGGCTTTC
TACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCT
CGTTAGGTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGC
CCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTAC
CGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCT
ATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGA
CTGGATCATTAAATGTTAGTAGTTTATGAGATATTAAGGCTTTGGTGAGG
CGGTAATGAATTACTGTTGAAGGTTAAATTTTGTAATGGATGATA