BQ623446 | Citrus Genome Database

Overview


Name	BQ623446
Unique Name	BQ623446
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	445

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623446_ssr307	microsatellite	BQ623446_ssr307:307..318.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13763	contig	Csv1_Contig13763:264..707.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.016e-27
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQIYAIRQ+I+KA+VA+YQK+VDE SK E+K  L+ YDRTLLVADPRR EPKKFGG GARAR QKSYR
Sbjct:   69 GGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140

HSP 2 Score: 31.5722 bits (70), Expect = 1.016e-27
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FAGVD+R+RV GGGH
Sbjct:   57 FAGVDIRVRVSGGGH 71

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.721e-27
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YA+RQ+IAKA+VA+Y KYVDE SK  +K  L+++DRTLLVADPRRCEPKKFGG+GAR+RFQKSYR
Sbjct:   71 GGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLLVADPRRCEPKKFGGKGARSRFQKSYR 142

HSP 2 Score: 26.9498 bits (58), Expect = 1.721e-27
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FA VD+R++V GGGH
Sbjct:   59 FAEVDIRLKVSGGGH 73

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.419e-26
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:   71 GGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142

HSP 2 Score: 27.7202 bits (60), Expect = 1.419e-26
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            F G+D+R++V GGGH
Sbjct:   59 FQGIDIRVKVTGGGH 73

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.848e-26
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGARARFQKSYR
Sbjct:   72 GGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARARFQKSYR 143

HSP 2 Score: 28.4906 bits (62), Expect = 1.848e-26
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FA +D+R+RV GGGH
Sbjct:   60 FANIDIRVRVTGGGH 74

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.075e-26
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGG+GARARFQKSYR
Sbjct:   72 GGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADARRPEPKKFGGKGARARFQKSYR 143

HSP 2 Score: 28.4906 bits (62), Expect = 4.075e-26
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FA +D+R+RV GGGH
Sbjct:   60 FANIDIRVRVTGGGH 74

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.905e-26
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK LVA++QKYVDEQSK E+K     YDRTLL+AD RR EPKKFGG+GAR+RFQKSYR
Sbjct:   72 GGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143

HSP 2 Score: 27.335 bits (59), Expect = 6.905e-26
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            F+ +D+R+RV GGGH
Sbjct:   60 FSNIDIRVRVTGGGH 74

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.988e-26
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGAR+RFQKSYR
Sbjct:   72 GGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRFQKSYR 143

HSP 2 Score: 27.335 bits (59), Expect = 8.988e-26
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            FA +D+R++V GGGH
Sbjct:   60 FANIDIRVKVTGGGH 74

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.169e-25
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  ++QIYA+RQ++AKALVA+Y KYVDEQSK+E+K+I   YD++LLVADPRR E KKFGG GARAR+QKSYR
Sbjct:   73 GGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144

HSP 2 Score: 27.335 bits (59), Expect = 1.169e-25
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            F  VD+RIRV GGGH
Sbjct:   61 FQDVDIRIRVSGGGH 75

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.982e-25
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK LVA++QK+VDE SK E+K +   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:   71 GGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142

HSP 2 Score: 25.7942 bits (55), Expect = 1.982e-25
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            F  +D+R++V GGGH
Sbjct:   59 FQNIDIRVKVSGGGH 73

[Close]

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.095e-24
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 2

Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  +SQ+YAIRQ+IAK L+A++QK+VDEQSK E+K     YDRTLL+AD R  EPKKFGG+GAR+R+QKSYR
Sbjct:   72 GGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLLIADSRMPEPKKFGGKGARSRYQKSYR 143

HSP 2 Score: 26.9498 bits (58), Expect = 6.095e-24
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:    1 FAGVDMRIRVKGGGH 45
            F  +D+R+RV GGGH
Sbjct:   60 FTNIDIRVRVTGGGH 74

The following BLAST results are available for this feature:

BLAST of BQ623446 vs. ExPASy Swiss-Prot

BLAST of BQ623446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32


Match Name	E-value	Identity	Description
RS16_SCHPO	1.016e-27	75.00	40S ribosomal protein S16 OS=Schizosaccharomyces p...	[more]
RS16_NEUCR	1.721e-27	72.22	40S ribosomal protein S16 OS=Neurospora crassa GN=...	[more]
RS16_CANAL	1.419e-26	75.00	40S ribosomal protein S16 OS=Candida albicans GN=R...	[more]
RS16_ASHGO	1.848e-26	73.61	40S ribosomal protein S16 OS=Ashbya gossypii GN=RP...	[more]
RS16_CANGA	4.075e-26	72.22	40S ribosomal protein S16 OS=Candida glabrata GN=R...	[more]
RS16_YEAST	6.905e-26	72.22	40S ribosomal protein S16 OS=Saccharomyces cerevis...	[more]
RS16_KLULA	8.988e-26	72.22	40S ribosomal protein S16 OS=Kluyveromyces lactis ...	[more]
RS16_CAEEL	1.169e-25	70.83	40S ribosomal protein S16 OS=Caenorhabditis elegan...	[more]
RS16_DEBHA	1.982e-25	72.22	40S ribosomal protein S16 OS=Debaryomyces hansenii...	[more]
RS16_SACEX	6.095e-24	66.67	40S ribosomal protein S16 OS=Saccharomyces exiguus...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00537 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00537 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623446 ID=BQ623446; Name=BQ623446; organism=Citrus sinensis; type=EST; length=445bp
TTCGCCGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACTGT
CGCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTGGCTTTC
TACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCT
CGTTAGGTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGC
CCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTAC
CGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCT
ATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGA
CTGGATCATTAAATGTTAGTAGTTTATGAGATATTAAGGCTTTGGTGAGG
CGGTAATGAATTACTGTTGAAGGTTAAATTTTGTAATGGATGATA