BQ623446

Overview
NameBQ623446
Unique NameBQ623446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.613e-12
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  + Q  A R  IA+ LV       D  S  ++K+  V+YDRT+LV DPRR EPKK+GGRGARAR QKSYR
Sbjct:  218 GGIVGQAEAARMVIARGLV-------DWTSDMDLKEKFVQYDRTMLVGDPRRSEPKKYGGRGARARRQKSYR 282
[Close]
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Match: RS9_METST (30S ribosomal protein S9P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps9p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.974e-11
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:   38 GDTLSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 253
            G  + Q  A R  IAK LV +            +KD  V+YDRT+LV DPRR E KKFGG GARAR QKSYR
Sbjct:   69 GGIMGQAEAARMVIAKGLVEY-------TGDMNLKDRYVQYDRTMLVGDPRRSESKKFGGPGARARKQKSYR 133
The following BLAST results are available for this feature:
BLAST of BQ623446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RLSX_METTH1.613e-1254.17Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RS9_METST3.974e-1152.7830S ribosomal protein S9P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00537 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00537 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623446 ID=BQ623446; Name=BQ623446; organism=Citrus sinensis; type=EST; length=445bp
TTCGCCGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACTGT
CGCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTGGCTTTC
TACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCT
CGTTAGGTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGC
CCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTAC
CGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCT
ATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGA
CTGGATCATTAAATGTTAGTAGTTTATGAGATATTAAGGCTTTGGTGAGG
CGGTAATGAATTACTGTTGAAGGTTAAATTTTGTAATGGATGATA
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