BQ623447

Overview
NameBQ623447
Unique NameBQ623447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_YEAST (RING-box protein HRT1 OS=Saccharomyces cerevisiae GN=HRT1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.244e-30
Identity = 58/119 (48.74%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 513
            RFEIKKW+AVA W+W                                DI VDNCAICRNHIM+ CIECQ    + T  EC  AWGVCNHAFH HCI++W+KTR  CPLDN  W+  + G
Sbjct:   34 RFEIKKWTAVAFWSW--------------------------------DIAVDNCAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINKWIKTRDACPLDNQPWQLARCG 120          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX2_MOUSE (RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 42/118 (35.59%), Postives = 55/118 (46.61%), Query Frame = 1
Query:  160 FEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 513
            F +KKW+AVA+W+W                                D+  D CAICR  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSW--------------------------------DVECDTCAICRVQVMDACLRCQAENKQ---EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX2_HUMAN (RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 42/118 (35.59%), Postives = 55/118 (46.61%), Query Frame = 1
Query:  160 FEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 513
            F +KKW+AVA+W+W                                D+  D CAICR  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSW--------------------------------DVECDTCAICRVQVMDACLRCQAENKQ---EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: APC11_BOVIN (Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 35/120 (29.17%), Postives = 50/120 (41.67%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 507
            R +IK W+ VA W W  N                                 +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 RVKIKCWNGVATWLWVAN--------------------------------DENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: APC11_DICDI (Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1
Query:  298 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNSEWEFQ 504
            D+  + C ICR      C++C+        ++C   WGVCNHAFH HCI +WL     Q CP+  SEW F+
Sbjct:   18 DVNEECCGICRMAFDGCCVDCKI-----PGDDCPPVWGVCNHAFHMHCILKWLNANELQQCPMCRSEWRFK 83          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: APC11_MOUSE (Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 507
            + +IK W+ VA W W  N                                 +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVAN--------------------------------DENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: APC11_PONAB (Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 507
            + +IK W+ VA W W  N                                 +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVAN--------------------------------DENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: APC11_HUMAN (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 507
            + +IK W+ VA W W  N                                 +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVAN--------------------------------DENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
The following BLAST results are available for this feature:
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1_YEAST7.244e-3048.74RING-box protein HRT1 OS=Saccharomyces cerevisiae ... [more]
RBX2_MOUSE1.085e-1735.59RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV... [more]
RBX2_HUMAN1.085e-1735.59RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV... [more]
APC11_BOVIN1.982e-1129.17Anaphase-promoting complex subunit 11 OS=Bos tauru... [more]
APC11_DICDI2.588e-1140.85Anaphase-promoting complex subunit 11 OS=Dictyoste... [more]
APC11_MOUSE4.415e-1128.33Anaphase-promoting complex subunit 11 OS=Mus muscu... [more]
APC11_PONAB5.767e-1128.33Anaphase-promoting complex subunit 11 OS=Pongo abe... [more]
APC11_HUMAN5.767e-1128.33Anaphase-promoting complex subunit 11 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00538 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00538 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623447 ID=BQ623447; Name=BQ623447; organism=Citrus sinensis; type=EST; length=661bp
CTTTTCTTTCTGTAGAGACCTAAACAAGCGTTCGTTGTTGGGTTTCCACA
AGAATCGAGAAAAAAATGGCGGACCTTGGACTCAGACGTACCGATGGTTC
CAGTCGGAGAGGCATCAAGCAGTGCAGGCCCTTCATCTTCCTCCAAGAAG
CCTAAACGTTTCGAGATCAAAAAGTGGAGCGCCGTCGCCCTCTGGGCTTG
GGGTGTAAACCTAACCCTAATTGTCTTCTTTTTGCCTTTTGTTTTCTGTA
ATTGAAAATTTAGCTAGTTTTAAATTTTGTGTTGCTTGATGAATGCAGAT
ATTGTTGTCGATAATTGTGCGATTTGCAGGAACCACATCATGGATCTCTG
CATCGAGTGCCAGGCTAACCAAGCTAGCGCTACAAGCGAGGAATGCACTG
TAGCTTGGGGGGTTTGCAACCATGCATTTCACTTTCACTGCATCAGTCGA
TGGCTGAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGGGAGTT
CCAGAAGTATGGTCACTAGAGCCTTTGAGCCAGTTGAGTTTTGGATTCTG
TCTGCTATGTATTGCAGATTTCAAGTAGATATTATGGAAGACCCTGGACT
TTCTGTCAATTCTATTTGATGCTCTTTGTTATCTAAAATTCAGTTGGTTA
TGACTTGGATT
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