BQ623449

Overview
NameBQ623449
Unique NameBQ623449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:579..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.321e-47
Identity = 87/99 (87.88%), Postives = 94/99 (94.95%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  166 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.725e-47
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 3
Query:    3 VMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  167 LMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.253e-47
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  166 LMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.018e-47
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 3
Query:    3 VMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  168 LMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 5.018e-47
Identity = 87/99 (87.88%), Postives = 93/99 (93.94%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MG VEGYR+ GGPLGE  DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  167 LMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.018e-47
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 3
Query:    3 VMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  168 LMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.460e-46
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  139 LMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.253e-46
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 296
            +MGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  170 LMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.248e-46
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  167 LMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.246e-46
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = 3
Query:    3 VMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 299
            +MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  167 LMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of BQ623449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB21_LEMGI1.321e-4787.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SINAL1.725e-4792.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB48_MAIZE2.253e-4789.90Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_ARATH5.018e-4790.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_GOSHI5.018e-4787.88Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_ARATH5.018e-4790.00Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_SOLLC1.460e-4686.87Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2_PHYPA3.253e-4688.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC4.248e-4685.86Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC7.246e-4685.86Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00540 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623449 ID=BQ623449; Name=BQ623449; organism=Citrus sinensis; type=EST; length=516bp
GGGTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGT
GAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGA
ATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATT
GTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCC
TGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGT
GAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGAT
TGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTA
ATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTT
GTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAAT
CTAGTTACAAGTTTAC
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