BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT24_DICDI (Putative actin-24 OS=Dictyostelium discoideum GN=act24 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM+KE+TALAPS+MKIK++APPERKYS WIGGSILASLS+FQ  WISK EYDESGPSIVHRKC+
Sbjct:  313 DRMNKELTALAPSTMKIKIIAPPERKYSAWIGGSILASLSSFQPRWISKEEYDESGPSIVHRKCW 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM +    LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMRQGNHCLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: POTEF_HUMAN (POTE ankyrin domain family member F OS=Homo sapiens GN=POTEF PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.504e-26
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            RM KEI ALAPS MKI+++APP+RKYSVW+GGSILASLSTFQQMWISK EYDESGPSIVHRKC
Sbjct: 1012 RMQKEIAALAPSMMKIRIIAPPKRKYSVWVGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 1074          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_PLABA (Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB001050.02.0 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 53/65 (81.54%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R++ E+T+LAP SMKIKV+APPERKYSVWIGGSIL+SLSTFQ+MWI+K EYDESGPSIVHRKCF
Sbjct:  312 ERLTNEMTSLAPPSMKIKVIAPPERKYSVWIGGSILSSLSTFQKMWITKEEYDESGPSIVHRKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_PLABA (Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB000323.01.0 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.003e-25
Identity = 54/65 (83.08%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R++++IT LAPS+MKIKVVAP ERKYSVWIGGSIL+SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  311 ERLTRDITTLAPSTMKIKVVAPLERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 375          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM +E+ ++APSS+KIK+VAP ERKYSVWIGGSILASLSTFQQMWISK EYDE GPS+VHRKCF
Sbjct:  313 DRMQRELASVAPSSVKIKLVAPAERKYSVWIGGSILASLSTFQQMWISKAEYDEFGPSVVHRKCF 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_PLAYO (Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 53/65 (81.54%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R++ E+T LAP SMKIKV+APPERKYSVWIGGSIL+SLSTFQ+MWI+K EYDESGPSIVHRKCF
Sbjct:  312 ERLTNEMTNLAPPSMKIKVIAPPERKYSVWIGGSILSSLSTFQKMWITKEEYDESGPSIVHRKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_PHYIN (Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +RM+KE+  LAP++MK+K++ PPERKYSVWIGGSILASL+TFQ MWISK EYDESGPSIVHRKCF
Sbjct:  311 ERMTKEVIKLAPTAMKVKIITPPERKYSVWIGGSILASLATFQHMWISKTEYDESGPSIVHRKCF 375          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_BRAFL (Actin, muscle OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.712e-25
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KE+ ALAPS+MKIK++APPERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  314 DRMQKEMVALAPSTMKIKIIAPPERKYSCWIGGSILASLSTFASMWIKKSEYDEAGPAIVHRKCF 378          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_STRPU (Actin, muscle OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.235e-25
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSS+KIK++APPERKYSVWIGGSILASLSTFQQMWISK EY  SG SIVHRKCF
Sbjct:  312 DRMQKEITALAPSSVKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY--SGASIVHRKCF 374          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT24_DICDI3.449e-2683.08Putative actin-24 OS=Dictyostelium discoideum GN=a... [more]
ACT1_SORBI3.449e-2687.69Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
POTEF_HUMAN4.504e-2685.71POTE ankyrin domain family member F OS=Homo sapien... [more]
ACT2_PLABA5.883e-2681.54Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]
ACT1_PLABA1.003e-2583.08Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]
ACT_CYAME1.310e-2581.54Actin OS=Cyanidioschyzon merolae PE=3 SV=1[more]
ACT2_PLAYO1.310e-2581.54Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=... [more]
ACT2_PHYIN1.310e-2578.46Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=... [more]
ACTM_BRAFL1.712e-2580.00Actin, muscle OS=Branchiostoma floridae PE=2 SV=1[more]
ACTM_STRPU2.235e-2587.69Actin, muscle OS=Strongylocentrotus purpuratus PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
back to top